| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,268,961 – 8,269,058 |
| Length | 97 |
| Max. P | 0.748745 |
| Location | 8,268,961 – 8,269,058 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 63.32 |
| Shannon entropy | 0.65354 |
| G+C content | 0.38635 |
| Mean single sequence MFE | -20.64 |
| Consensus MFE | -7.12 |
| Energy contribution | -6.16 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.748745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8268961 97 - 27905053 --UAUUUGUGCCUCAGGAGCCC-UUCUUUAAAAUAGUCUUACAUAUGCCUCUGAUUUUUAACAGAUUAGGUGGCAAGAAGAAGAAUUUCGCAAUUGCACC --.....((((....((((..(-((((((......(.....)...((((((((((((.....)))))))).)))).)))))))..))))......)))). ( -22.80, z-score = -1.51, R) >droAna3.scaffold_13340 7650981 80 - 23697760 UUAAUUUACACCUUUUAA-----UUGUUAAGAAUUUCUUUCCACUAAAGAGGGGCCGCUAAAUAGUUGUACCUCUUGAAAAAGUC--------------- ...........(((((..-----.((..(((.....)))..))...((((((..(.(((....))).)..))))))..)))))..--------------- ( -15.00, z-score = -1.09, R) >droYak2.chr3R 12592376 89 - 28832112 --------UCCCUUAGGACCCCUUUCUUCAAAAUGGUCCUACAAACGCCUCUGAUUUUUAACAGAUUAGGUGG---AAAGAAGAAUUCCGCAUUCGCACA --------.....(((((((..(((....)))..))))))).....((..(((((((.....)))))))((((---((.......))))))....))... ( -21.00, z-score = -1.81, R) >droSec1.super_0 7442257 91 + 21120651 --------UGCCUCAGGAGCCC-UUCUUCAAAAUAGUCCUACAUACGCCUCUGAUUUUUAAAAGAUUAGGUGGCAAGAAGAAGAAUUUCGCAUUCACACA --------(((....((((..(-((((((......(.....)....(((((((((((.....)))))))).)))..)))))))..)))))))........ ( -20.70, z-score = -1.59, R) >droSim1.chr3R 14396875 97 + 27517382 --UAUUUGUGCCUUAGGAGCCC-UUCUUCAAAAUAGUCCUACAUACGCCUCUGAUUUUUAACAGAUUAGGUGGCAAGAAGAAGAAUUUCGCAUUCACACA --....((((.....((((..(-((((((......(.....)....(((((((((((.....)))))))).)))..)))))))..)))).....)))).. ( -23.70, z-score = -2.32, R) >consensus ___AUUU_UGCCUUAGGAGCCC_UUCUUCAAAAUAGUCCUACAUACGCCUCUGAUUUUUAACAGAUUAGGUGGCAAGAAGAAGAAUUUCGCAUUCACACA ...............((((......)))).................(((((((((((.....)))))))).))).......................... ( -7.12 = -6.16 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:10 2011