| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,268,539 – 8,268,657 |
| Length | 118 |
| Max. P | 0.534392 |
| Location | 8,268,539 – 8,268,657 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.53 |
| Shannon entropy | 0.33897 |
| G+C content | 0.48008 |
| Mean single sequence MFE | -34.47 |
| Consensus MFE | -20.82 |
| Energy contribution | -21.63 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8268539 118 - 27905053 CGUGGGAGCUUACACAAGAGCGAACGAGAGCGAUAGUAAGCGCUAAGAGCAAGAUGGAACGAGAGUAGUUUUAAUU--UUGUUAUUGUUGUGGCCCGUUAUCACGUUGCAAGAGCGUGAU ...(((.((((......)))).(((((.((((........))))...(((((((((((((.......))))).)))--))))).)))))....)))...((((((((.....)))))))) ( -31.60, z-score = -1.30, R) >droAna3.scaffold_13340 7650572 116 - 23697760 UGUGGGAGCUUAUAGUAGUAUAUAGUAGAG----AGAGCCCGCCGGAAAGAAAGUACGAAGAGAGCAAUUUGCGUCAAAUGUUUUUGUUGGAGACCCGUAUCACGUUGCAGAAGCGUGAU .(((((..(((.((.((.....)).))..)----))..)))))(((..............(((((((.((((...)))))))))))...(....)))).((((((((.....)))))))) ( -29.20, z-score = -2.07, R) >droEre2.scaffold_4770 4394033 118 + 17746568 CGUGGGAGCUUACACGAGAGCGAAAAAGAGCGGCAGUAAGCUCAAAGAGCAAGAUGAAGCGAGAGUAGUUUUCCUU--UUGUUAUUGUUGCGGGCCGUUAUCACGUUGCAAGAGCGUGAU ((((........))))............((((((.((((((((...)))).......((((((((........)))--)))))....))))..))))))((((((((.....)))))))) ( -35.20, z-score = -1.18, R) >droYak2.chr3R 12591923 118 - 28832112 CGUGGGAGCUUACACGAGAGCAAAAGAGAGCGGCAGAAAGCGCAAAGAGCAAGAUGGAGCGAGAGUAGUUUUCCAU--UUGUUAUUGUUGCGGCCCGUUAUCACGUUGCAAGAGCGUGAU ...(((.((((......))))........(((((((..(((((.....)).(((((((((....)).....)))))--))))).)))))))..)))...((((((((.....)))))))) ( -34.30, z-score = -1.29, R) >droSec1.super_0 7441841 118 + 21120651 CGUGGGAGCUUACACAAGAGCAAACGAGAGCGGUAGUAAGCGCAAAGAGCAAGAUGGAGCGAGAGUAGUUUUCCUU--UUGUUAUUGUUGCGGCCCGUUAUCACGUUGCAAGAGCGUGAU ...(((.((((((((....((........)).)).))))))((((..(((((((.(((((....)).....)))))--)))))....))))..)))...((((((((.....)))))))) ( -37.90, z-score = -2.21, R) >droSim1.chr3R 14396430 118 + 27517382 CGUGGGAGCUUACACAAGAGCGAACGAGAGCGGUAGUAAGCGCAAAGAGCAAGAUGGAGCGAGAGUAGUUUUCCUU--UUGUUAUUGUUGCGGCCCGUUAUCACGUUGCAAGAGCGUGAU ...(((.((((((((....((........)).)).))))))((((..(((((((.(((((....)).....)))))--)))))....))))..)))...((((((((.....)))))))) ( -38.60, z-score = -2.25, R) >consensus CGUGGGAGCUUACACAAGAGCAAACGAGAGCGGUAGUAAGCGCAAAGAGCAAGAUGGAGCGAGAGUAGUUUUCCUU__UUGUUAUUGUUGCGGCCCGUUAUCACGUUGCAAGAGCGUGAU ...(((.((((......))))........((((((((((((.......))(((((...((....)).))))).........))))))))))..)))...((((((((.....)))))))) (-20.82 = -21.63 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:09 2011