| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,239,463 – 8,239,520 |
| Length | 57 |
| Max. P | 0.612275 |
| Location | 8,239,463 – 8,239,520 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 66.93 |
| Shannon entropy | 0.58550 |
| G+C content | 0.39777 |
| Mean single sequence MFE | -10.53 |
| Consensus MFE | -5.62 |
| Energy contribution | -3.98 |
| Covariance contribution | -1.63 |
| Combinations/Pair | 2.17 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8239463 57 - 27905053 CUGUAGGUUAUCGAUAGUUUCUGUGCCUCGCUCUGCGGAACUAGUUUCAAUUGCUAG------- (((((((....(((..((......)).))).)))))))..(((((.......)))))------- ( -10.50, z-score = 0.12, R) >droAna3.scaffold_13340 7622106 64 - 23697760 CCUUAUGUAUACGAUAGUUUUUUCUCAUCGAUUAUAAAAGAUCAAAAUAAUCUUUGAAAUCUAC .(((.((((..((((((......)).))))..)))).))).(((((......)))))....... ( -8.00, z-score = -1.02, R) >droEre2.scaffold_4770 4366149 56 + 17746568 CCGUCAGUUAUCGAUAC-UUUCGUGAUUCUCUGUACGGAACUAGUUCUAAUAUCUAG------- (((((((....(((...-..))).......))).))))..((((.........))))------- ( -10.50, z-score = -0.99, R) >droYak2.chr3R 12562551 56 - 28832112 CCGUCAGUUAUCGAUAG-UUUCGUGCUUCUCUCUACGGAACUAGUUUCAAUUUUUAG------- ..............(((-(((((((........))))))))))..............------- ( -10.10, z-score = -1.81, R) >droSec1.super_0 7412704 57 + 21120651 CUGUAGGUUAUCGAUAGUUUUUGUACCCCGCUCUACGGAACUAGUUUCAAUUGCUAG------- ((((((((...(((......)))......)).))))))..(((((.......)))))------- ( -10.10, z-score = -0.44, R) >droSim1.chr3R 14366621 57 + 27517382 CUGUAGGUUAUCGAUAGUUUCUGUGCCUCGCUGCGCGGAACUAGUUUCAAUUGCUAG------- ..((((........(((((.((((((......))))))))))).......))))...------- ( -13.96, z-score = -0.81, R) >consensus CCGUAGGUUAUCGAUAGUUUUUGUGCCUCGCUCUACGGAACUAGUUUCAAUUGCUAG_______ ..................(((((((........)))))))(((((.......)))))....... ( -5.62 = -3.98 + -1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:08 2011