| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,212,433 – 8,212,526 |
| Length | 93 |
| Max. P | 0.775432 |
| Location | 8,212,433 – 8,212,526 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.60 |
| Shannon entropy | 0.58728 |
| G+C content | 0.54688 |
| Mean single sequence MFE | -28.86 |
| Consensus MFE | -11.23 |
| Energy contribution | -11.08 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.775432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8212433 93 - 27905053 CCAGCCUUAUCCAUCGACGG---------AUUCAAUUUUGAUGGCUGUCUCUGGCAGCUGUCCGCCGA---UUUGAGAUCGAAUCGAAUCCCUCUACCCCGUCCA------- ...............((.((---------((((......(((((((((.....)))))))))....((---((((....)))))))))))).))...........------- ( -28.50, z-score = -2.56, R) >droEre2.scaffold_4770 4342240 98 + 17746568 CCAGCCUUAUCCAUCGACGG---------AUUCGAUUUUGAUGGCUGUCUCUGGCAGCUGUCCGCCGA---UUUGAGAUCGGAUCGACUCCCAAUCCCUGCUCCCCGCAA-- ..................((---------(.(((((...(((((((((.....)))))))))..((((---((...))))))))))).))).......(((.....))).-- ( -28.70, z-score = -1.01, R) >droYak2.chr3R 12538361 98 - 28832112 CCAGCCUUAUCCAUCGACGG---------AUUCAAUUUUGAUGCCUGUCUCUGGCAGCUGUCCGCCGA---UUUGAGAUCGAAUCGGCUCCCAAUCCCUGUUCCCCGCCA-- .((((.....(((..(((((---------..(((....)))...)))))..)))..))))...(((((---((((....)))))))))......................-- ( -27.60, z-score = -1.90, R) >droSec1.super_0 7382884 93 + 21120651 CCAGCCUUAUCCAUCGACGG---------AUUCAAUUUUGAUGGCUGUCUCUGGCAGCUGUCCGCCGA---UUUGAGAUCGAAUCGAAUCCCUCUACCCCGUCCA------- ...............((.((---------((((......(((((((((.....)))))))))....((---((((....)))))))))))).))...........------- ( -28.50, z-score = -2.56, R) >droSim1.chr3R 14342360 93 + 27517382 CCAGCCUUAUCCAUCGACGG---------AUUCAAUUUUGAUGGCUGUCUCUGGCAGCUGUCCGCCGA---UUUGAGAUCGAAUCGAAUCCCUCUACCCCGUCCA------- ...............((.((---------((((......(((((((((.....)))))))))....((---((((....)))))))))))).))...........------- ( -28.50, z-score = -2.56, R) >dp4.chr2 5442143 112 - 30794189 CCAGCUUUAUCUAUCGAUGGGGCAUAUUUGUCGAUUUUUGAUGGCUGUCACAGACAGCUGCCCAUCGCAGAUCCGAUCAGCAGCCGGCGUCCGCAUCCCCAGCCACCCCCCG ...((((((((....))))))))......(((((...)))))(((((.......(.(((((..((((......))))..))))).)((....)).....)))))........ ( -31.50, z-score = -0.61, R) >droPer1.super_19 1158331 112 - 1869541 CCAGCUUUAUCUAUCGAUGGGGCAUAUUUGUCGAUUUCUGAUGGCUGUCACAGACAGCUGCCCAUCGCAGAUCCGAUCAGCAGCCGGCGUCCGCAUCCCCAGCCACCCCCCG ...((((((((....))))))))..................((((((.......(.(((((..((((......))))..))))).)((....)).....))))))....... ( -31.50, z-score = -0.38, R) >droAna3.scaffold_13340 7600214 80 - 23697760 ACAACCUUAUCCAUCGACGG---------AUUCAGAUUUGAUGGCUGUCGCCGGCAGCUGUCCGUCGA--UUUUGACGAUCCAUCCGAUCA--------------------- ............((((((((---------((((......)).((((((.....)))))))))))))))--)......((((.....)))).--------------------- ( -26.10, z-score = -2.03, R) >consensus CCAGCCUUAUCCAUCGACGG_________AUUCAAUUUUGAUGGCUGUCUCUGGCAGCUGUCCGCCGA___UUUGAGAUCGAAUCGAAUCCCUCUACCCCGUCCA_______ .............(((.(((....................(((((((((...)))))))))))).)))....((((.......))))......................... (-11.23 = -11.08 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:06 2011