| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,180,412 – 8,180,526 |
| Length | 114 |
| Max. P | 0.530894 |
| Location | 8,180,412 – 8,180,526 |
|---|---|
| Length | 114 |
| Sequences | 13 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.31 |
| Shannon entropy | 0.47156 |
| G+C content | 0.55668 |
| Mean single sequence MFE | -39.05 |
| Consensus MFE | -18.05 |
| Energy contribution | -18.31 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8180412 114 + 27905053 GAUCCAGCCAGGAGGCAGACGCCAAUCCUGCACGAUAACAGUGGGUUUCUGGUGCUCGCCCACAAUCAGAAAACCCUCGGUUCCAAUAGGCUGGUCAUUUACCCAAUGACAAGU ....((((((((((((....)))..)))).......(((.(.(((((((((((...........))))).)))))).).)))......)))))((((((.....)))))).... ( -36.20, z-score = -1.74, R) >droEre2.scaffold_4770 4312115 114 - 17746568 GAUCCAGCCAGGAGGCAGACGCCAGUCCUGCACGAUGACAGUGGGUUUCUGGUGUUCGCCCACAAUCAGGAAACCCUCAGUUCCAAUAGGUUGGUCAUUUACCCAAUGACAAGU ....(((((.(..(((..(((((((.((..(.........)..))...)))))))..)))..).....((((........))))....)))))((((((.....)))))).... ( -40.30, z-score = -2.47, R) >droYak2.chr3R 12498730 114 + 28832112 GAUCCAGCCAGGAGGCAGACGCCAGUCCUGCACGAUAACAGUGGGUUUCUGGUGUUCGCCCACAAUCAGGAAACCCUCGGUUCCAAUAGGUUGGUCAUUUACCCAGUGACAAGU ....(((((.(..(((..(((((((.((..(.........)..))...)))))))..)))..).....((((.((...))))))....)))))((((((.....)))))).... ( -41.60, z-score = -2.71, R) >droSec1.super_0 7353485 114 - 21120651 GAUCCAGCCAGGAGGCAGACGCCAAUCCUGCACGAUAACAGUGGGUUUCUGGUGCUCGCCCACAAUCAGGAAACCCUCGGUUCCAAUAGGCUGGUCAUUUACCCAAUGACAAGU ....(((((.(..(((((.(((((..((..(.........)..))....))))))).)))..).....((((.((...))))))....)))))((((((.....)))))).... ( -37.60, z-score = -1.65, R) >droSim1.chr3R 14309054 114 - 27517382 GAUCCAGCCAGGAGGCAGACGCCAAUCCUGCACGAUAACAGUGGGUUUCUGGUGCUCGCCCACAAUCAGGAAACCCUCGGUUCCAAUAGGCUGGUCAUUUACCCAAUGACAAGU ....(((((.(..(((((.(((((..((..(.........)..))....))))))).)))..).....((((.((...))))))....)))))((((((.....)))))).... ( -37.60, z-score = -1.65, R) >dp4.chr2 22976976 114 + 30794189 GAUCCAGCCGGUGGGCAGACGCCAGUCCUGCACAAUCACCGUGGGCUUUUGGUGCUCGCCCACAAUUAGAAAACCUUCGGUGCCAAUCGGUUGAUCGUUCACCCAGUGGCACGU ((((.(((((((((((((((....)).)))).....((((((((((...........)))))).....(((....))))))))).)))))))))))((((((...)))).)).. ( -41.30, z-score = -1.25, R) >droPer1.super_3 5753852 114 + 7375914 GAUCCAGCCGGUGGGCAGACGCCAGUCCUGCACAAUCACCGUGGGCUUUUGGUGCUCGCCCACAAUUAGAAAACCUUCGGUGCCAAUCGGUUGAUCGUUCACCCAGUGGCACGU ((((.(((((((((((((((....)).)))).....((((((((((...........)))))).....(((....))))))))).)))))))))))((((((...)))).)).. ( -41.30, z-score = -1.25, R) >droAna3.scaffold_13340 19481297 114 - 23697760 GAUCCAGCCGGGAGGCAGUCGCCAGUCCUCCACAAUAACCGUAGGCUUCUGGUGCUCGCCAACGAUUAGGAAACCUUCGGUGCCAAUGGGUUGGUCGUUAACCCAAUGGCACGU ..(((.....)))(((((.((((((.(((.(.........).)))...)))))))).)))..(((...(....)..)))((((((.(((((((.....))))))).)))))).. ( -43.90, z-score = -2.12, R) >droWil1.scaffold_181089 5938231 114 - 12369635 CACCCAGCCCGGAGGCAAGCGCCAAUCCUGUACAAUAACCGUGGGUUUCUGAUGUUCGCCCACAAUAAGAAAACCUUCGGACCCAAUCGGUUGAUCGUUCACCCAAUGGCAGGU .(((..(((.((.(((....)))...............(((.((((((((..(((......)))...)).)))))).)))..))....((.(((....))).))...))).))) ( -29.60, z-score = 0.23, R) >droMoj3.scaffold_6540 13911154 114 - 34148556 GAUCCAGCCAGGCGGCAAUCGCCAGUCGUGAACGAUCACCGUCGGCUUCUGGUGCUCCCCGACAAUUAGAUAGCCUUCUGUGCCGAUCGGCUGAUCGUUCACCCAAUGGCAUGU ......((((((((((....))).)))(((((((((((((((((((.((.((.....)).))....((((......)))).))))).))).)))))))))))....)))).... ( -48.10, z-score = -3.76, R) >droVir3.scaffold_13047 16028976 114 - 19223366 UAUCCAACCAGGCGGCAGUCGCCAAUCGUGCACAAUUACAGUUGGCUUCUGGUGCUCUCCCACAAUCAGAAAACCUUCGGUGCCAAUUGGCUGAUCAUUCACCCAAUGGCAAGU ......(((.((((.(((..((((((.(((......))).))))))..))).))))............(((....))))))((((.((((.(((....))).)))))))).... ( -36.10, z-score = -2.25, R) >droGri2.scaffold_15074 174504 114 - 7742996 GAUCCAACCAUCCGGCAGCCGCCAGUCGUGUACAAUUACCGUUGGCUUCUGAUGCUCACCCACAAUGAGAAAACCUUCGGUGCCAAUGGGCUGAUCGUUUACCCAGUGACAGGU ......(((....(((....))).(((...........((((((((..((((..((((.......)))).......)))).))))))))((((..........))))))).))) ( -32.40, z-score = -0.52, R) >anoGam1.chr2L 31191095 114 + 48795086 GACCCACCCCUCCGGCAUGCGCCAGUCGGGCACGAUCACGGUGUACACCCGGCCGCCCGGCAGGUCCACCUCGGACGACUCCCCGACCGGAUAGUCGUUCAUCCAGUGGCAGCA ...((((.(((((((...(((...(((((((((.......)))....))))))))))))).)))........((((((((..((....))..)))))))).....))))..... ( -41.70, z-score = 0.06, R) >consensus GAUCCAGCCAGGAGGCAGACGCCAGUCCUGCACGAUAACAGUGGGCUUCUGGUGCUCGCCCACAAUCAGAAAACCUUCGGUGCCAAUAGGCUGGUCGUUCACCCAAUGGCAAGU ((((.((((....(((....))).................(((((.............))))).........................)))))))).................. (-18.05 = -18.31 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:09:03 2011