| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,133,384 – 8,133,483 |
| Length | 99 |
| Max. P | 0.751128 |
| Location | 8,133,384 – 8,133,483 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 96.57 |
| Shannon entropy | 0.06164 |
| G+C content | 0.47879 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -20.46 |
| Energy contribution | -20.46 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8133384 99 + 27905053 CACAGCGUAAUUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCAGAGUUGGUCUGCACUCCGGACCCGCAGCCAUUCGAAUACACUG ..(((.(((...(((........((((......)))).......((((((((....)))))((((((.....))))))......)))..)))))).))) ( -21.30, z-score = -1.46, R) >droSim1.chr3R 14264688 99 - 27517382 CACAGCGUAAUUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCAGAGUUGGUCUGCACUCCGGACCCGCAGCCAUUCGAAUACCCUG ..(((.(((...(((........((((......)))).......((((((((....)))))((((((.....))))))......)))..)))))).))) ( -20.40, z-score = -1.21, R) >droSec1.super_0 7306971 99 - 21120651 CACAGCGUAAUUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCAGAGUUGGUCUGCACUCCGAAGCCGCAGCCAUUCGAAUACCCUG ..(((.(((..............((((......)))).....((...(((((....)))))((.((((.((....))..))))))....)).))).))) ( -20.30, z-score = -1.17, R) >droYak2.chr3R 12450948 99 + 28832112 CACAGCGUAAUUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCAGAGUUGGUCUGCACUCCGGACCCGCAGCCAUUCGAAUACUCUG ..(((.(((...(((........((((......)))).......((((((((....)))))((((((.....))))))......)))..)))))).))) ( -20.90, z-score = -1.23, R) >droEre2.scaffold_4770 4264348 99 - 17746568 CACAGCGUAAAUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCGGAGUUGGUCUGCACUCGGAACCCGCAGCCAUUCGACUACUCUG ..(((.(((..............((((......)))).....((...(((((....)))))((.((((...........))))))....)).))).))) ( -20.10, z-score = -0.47, R) >consensus CACAGCGUAAUUUUCAAUCAAAAUCGCACAUCCGCGAAAUUAUCAUGAACUCAGCAGAGUUGGUCUGCACUCCGGACCCGCAGCCAUUCGAAUACCCUG ..(((.(((..............((((......)))).....((...(((((....)))))((.((((...........))))))....)).))).))) (-20.46 = -20.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:55 2011