| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,127,191 – 8,127,289 |
| Length | 98 |
| Max. P | 0.984947 |
| Location | 8,127,191 – 8,127,289 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 98.37 |
| Shannon entropy | 0.02718 |
| G+C content | 0.53673 |
| Mean single sequence MFE | -42.52 |
| Consensus MFE | -41.96 |
| Energy contribution | -42.56 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984947 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8127191 98 - 27905053 UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUGUUCACCGUGGAUGUGGCUGCUGU .....((((.....))))((((((((((.(((((((((((..(((((((((..((........))..)))))))))))))))).)))))))))))))) ( -45.20, z-score = -3.26, R) >droSim1.chr3R 14257921 98 + 27517382 UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUAUUCACCGUGGAUGUGGCUGCCGU .....((((.....))))((.(((((((.(((((((((((....(((((((..((........))..)))))))..))))))).))))))))))).)) ( -35.40, z-score = -0.55, R) >droSec1.super_0 7300804 98 + 21120651 UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUGUUCACCGUGGAUGUGGCUGCCGU .....((((.....))))((.(((((((.(((((((((((..(((((((((..((........))..)))))))))))))))).))))))))))).)) ( -40.60, z-score = -1.80, R) >droYak2.chr3R 12444735 98 - 28832112 UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUGUUCACCGUGGCUGUGGCUGCUGU .....((((.....))))(((((((((((..(((((((((..(((((((((..((........))..))))))))))))))))))..))))))))))) ( -45.70, z-score = -3.05, R) >droEre2.scaffold_4770 4257937 98 + 17746568 UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUGUUCACCGUGGCUGUGGCUGCUGU .....((((.....))))(((((((((((..(((((((((..(((((((((..((........))..))))))))))))))))))..))))))))))) ( -45.70, z-score = -3.05, R) >consensus UGAUUUGCAUUGACUGCAGCAGCGGCCAUCAUCAUGGUGGCGGCAUCGCAGUAAUUAGACAGCAUCGUUGUGGUGUUCACCGUGGAUGUGGCUGCUGU .....((((.....))))(((((((((((..(((((((((..(((((((((..((........))..))))))))))))))))))..))))))))))) (-41.96 = -42.56 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:54 2011