| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,108,143 – 8,108,208 |
| Length | 65 |
| Max. P | 0.870318 |
| Location | 8,108,143 – 8,108,208 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 95.08 |
| Shannon entropy | 0.08541 |
| G+C content | 0.51692 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -18.26 |
| Energy contribution | -19.26 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8108143 65 + 27905053 CUGAGUAGCGAUCUCACCUCCAAGGUGCAAUUGGGGGUCAAUUGAUUUCGUACUCGGAUUCGAAC (((((((.(((..((((((((((.......)))))))).....))..))))))))))........ ( -22.90, z-score = -2.91, R) >droEre2.scaffold_4770 4238832 65 - 17746568 CUGAGCAGCGAUCUCAGCGCCAAGGUGCAAUUGGGGGUCAAUUGAUUUCGUACUCGGGCUCGAAC .(((((..(((.....((((....)))).....(..(((....)))..)....))).)))))... ( -21.00, z-score = -1.40, R) >droYak2.chr3R 12425535 65 + 28832112 CUGAGUAGCGAUCUCACCGCCAAGGUGCAAUUGGGGGUCAAUUGAUUUCGUACUCGGGCUCGAAC (((((((.((((..((((.....))))..))))(..(((....)))..).)))))))........ ( -21.90, z-score = -1.98, R) >droSec1.super_0 7281879 65 - 21120651 CUGAGUAGCGAUCUCACCUCCAAAGUGCAAUUGGGGGUCAAUUGAUUUCGAACUCGGGUUCGAAC ((((((..(((..((((((((((.......)))))))).....))..))).))))))........ ( -20.20, z-score = -1.94, R) >droSim1.chr3R 14237420 65 - 27517382 CUGAGUAGCGAUCUCACCUCCAAGGUGCAAUUGGGGGUCAAUUGAUUUCGUACUCGGGUUCGAAC (((((((.(((..((((((((((.......)))))))).....))..))))))))))........ ( -23.10, z-score = -2.81, R) >consensus CUGAGUAGCGAUCUCACCUCCAAGGUGCAAUUGGGGGUCAAUUGAUUUCGUACUCGGGUUCGAAC ((((((.((((..((((((((((.......))))))).....)))..))))))))))........ (-18.26 = -19.26 + 1.00)
| Location | 8,108,143 – 8,108,208 |
|---|---|
| Length | 65 |
| Sequences | 5 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 95.08 |
| Shannon entropy | 0.08541 |
| G+C content | 0.51692 |
| Mean single sequence MFE | -16.70 |
| Consensus MFE | -15.24 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870318 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8108143 65 - 27905053 GUUCGAAUCCGAGUACGAAAUCAAUUGACCCCCAAUUGCACCUUGGAGGUGAGAUCGCUACUCAG ..........((((((((...((((((.....))))))((((.....))))...))).))))).. ( -17.70, z-score = -2.41, R) >droEre2.scaffold_4770 4238832 65 + 17746568 GUUCGAGCCCGAGUACGAAAUCAAUUGACCCCCAAUUGCACCUUGGCGCUGAGAUCGCUGCUCAG ..........((((((((..(((((((.....)))))((.(....).)).))..))).))))).. ( -14.90, z-score = -0.88, R) >droYak2.chr3R 12425535 65 - 28832112 GUUCGAGCCCGAGUACGAAAUCAAUUGACCCCCAAUUGCACCUUGGCGGUGAGAUCGCUACUCAG ..........((((((((...((((((.....))))))((((.....))))...))).))))).. ( -17.40, z-score = -1.91, R) >droSec1.super_0 7281879 65 + 21120651 GUUCGAACCCGAGUUCGAAAUCAAUUGACCCCCAAUUGCACUUUGGAGGUGAGAUCGCUACUCAG .(((((((....)))))))........(((.((((.......)))).)))(((.......))).. ( -15.80, z-score = -1.50, R) >droSim1.chr3R 14237420 65 + 27517382 GUUCGAACCCGAGUACGAAAUCAAUUGACCCCCAAUUGCACCUUGGAGGUGAGAUCGCUACUCAG ..........((((((((...((((((.....))))))((((.....))))...))).))))).. ( -17.70, z-score = -2.61, R) >consensus GUUCGAACCCGAGUACGAAAUCAAUUGACCCCCAAUUGCACCUUGGAGGUGAGAUCGCUACUCAG ..........((((((((...((((((.....))))))((((.....))))...))).))))).. (-15.24 = -15.32 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:47 2011