| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,099,655 – 8,099,775 |
| Length | 120 |
| Max. P | 0.512187 |
| Location | 8,099,655 – 8,099,775 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 99.72 |
| Shannon entropy | 0.00690 |
| G+C content | 0.33403 |
| Mean single sequence MFE | -23.80 |
| Consensus MFE | -23.47 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.91 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8099655 120 + 27905053 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droEre2.scaffold_4770 4230290 120 - 17746568 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droSec1.super_0 7273292 120 - 21120651 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droSim1.chr3R 14228818 120 - 27517382 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droPer1.super_3 5659095 120 + 7375914 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droAna3.scaffold_13340 19392445 120 - 23697760 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droYak2.chr3R 12416865 120 + 28832112 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droWil1.scaffold_181089 12133835 120 - 12369635 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >dp4.chr2 22883612 120 + 30794189 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droVir3.scaffold_12855 9570980 120 + 10161210 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.95, R) >droMoj3.scaffold_6540 24636910 120 + 34148556 UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAAGUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. ( -23.80, z-score = -0.72, R) >droGri2.scaffold_14830 1989005 120 + 6267026 UGUGGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC ..(((((..........(((((..(((((((....)))))))..))))).((((((.............)))).......(((((((......))))))).))...)))))......... ( -23.82, z-score = -0.74, R) >consensus UGUUGCCAUUAGUUAACUUCAGCUUUGAUUGAUUUCAAUUAAUCUUGGACGCGUGUAAUUAAUCAUUGAACACUUUAAUAUGGUUAACAACUCUUGACCAAGCAACGGUUAAAAAGGUUC .(((((.(((((((((((((((..(((((((....)))))))..)))))...)).)))))))).................(((((((......))))))).))))).............. (-23.47 = -23.55 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:45 2011