| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,097,888 – 8,097,981 |
| Length | 93 |
| Max. P | 0.761075 |
| Location | 8,097,888 – 8,097,981 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 83.26 |
| Shannon entropy | 0.31893 |
| G+C content | 0.42058 |
| Mean single sequence MFE | -17.11 |
| Consensus MFE | -10.79 |
| Energy contribution | -10.47 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761075 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8097888 93 - 27905053 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUAUGAUAUUGAUAGAGGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCAGACCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))..------.............. ( -16.70, z-score = -1.65, R) >droSim1.chr3R 14227081 93 + 27517382 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUAUGAUAUUGAUAGAGGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCAGACCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))..------.............. ( -16.70, z-score = -1.65, R) >droSec1.super_0 7271542 93 + 21120651 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUAUGAUAUUGAUAGAGGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCAGACCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))..------.............. ( -16.70, z-score = -1.65, R) >droYak2.chr3R 12415154 93 - 28832112 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUAUGAUAUUGAUAGAGGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCAGACCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))..------.............. ( -16.70, z-score = -1.65, R) >droEre2.scaffold_4770 4228551 93 + 17746568 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUAUGAUAUUGAUAGAGGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCAGACCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))..------.............. ( -16.70, z-score = -1.65, R) >droAna3.scaffold_13340 19390467 93 + 23697760 -------------------CUCGUCCAGCCAACCGAGAGUUAUUAGCUUUUGUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUGACAG------CACCACCCGCUCCC -------------------((((..........)))).((((((.((((((((.......))))))))...((((....)))).......))))))((------(.......)))... ( -18.00, z-score = -1.94, R) >dp4.chr2 22882362 98 - 30794189 --------------------CCGUCCAGCCAACCGAGAAUUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUGACAGGCACCCCACCAUACAGCACC --------------------.......(((...........((..((((((((.......))))))))..))(((.((((.........))))))).))).................. ( -17.20, z-score = -2.35, R) >droPer1.super_3 5657840 98 - 7375914 --------------------CCGUCCAGCCAACCGAGAAUUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUGACAGGCACCCCACCAUACAGCGCC --------------------.......(((...........((..((((((((.......))))))))..))(((.((((.........))))))).))).................. ( -17.20, z-score = -1.91, R) >droWil1.scaffold_181089 12132454 108 + 12369635 AGAGUGAGUGAGAAAGUCUCUCGCCCAACCAACCGAAAAAUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUGCCUAA-----AACCAGCCA----- .(..((.((((((.....)))))).))..)...(((.(.((((..((((((((.......))))))))..)))).).)))...................-----.........----- ( -19.40, z-score = -2.26, R) >droVir3.scaffold_12855 9569058 94 - 10161210 -------------------CUCGUCCAGCCAACCGCAAAAUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUAGCCCG-----AAACAGUCAAGCCA -------------------...............((...((((..((((((((.......))))))))..))))((((((.........))))))....-----..........)).. ( -14.30, z-score = -1.11, R) >droMoj3.scaffold_6540 24635433 91 - 34148556 -------------------CUCGUCCAGCCAACCGCAAAAUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUAG-CCA-----AAACAG--AGGCCG -------------------........(((.........((((..((((((((.......))))))))..))))((((((.........))))))-...-----......--.))).. ( -17.50, z-score = -2.12, R) >droGri2.scaffold_14830 1987531 93 - 6267026 -------------------CUCGUCCAGCCAACCGCAAAAUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUAGACCA-----AAACAGCAAAACA- -------------------...............((.....((..((((((((.......))))))))..))((((((((.........))))))))..-----.....))......- ( -18.20, z-score = -3.63, R) >consensus ___________________CUCGUCCAGCCAACCGAGAAUUAUUAGCUUUUAUGAUAUUGAUAGAAGCCGAUGUCUAUUGACAAUUAAACAAUGACAG______CACCACCCAGACCC .........................................((..((((((((.......))))))))..))(((....))).................................... (-10.79 = -10.47 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:44 2011