| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,093,171 – 8,093,268 |
| Length | 97 |
| Max. P | 0.940782 |
| Location | 8,093,171 – 8,093,268 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 72.79 |
| Shannon entropy | 0.52822 |
| G+C content | 0.41499 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -13.26 |
| Energy contribution | -13.00 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8093171 97 + 27905053 ---------------------AGAGUCUCCCGACCAUAUAUAUGCAAUCUCAUAUGCAUUACUUUGCAUGUCUGGCGAGUUAAGGAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUU ---------------------.((((.(((((.(((...((((((((................)))))))).)))))......)))))))((((((...((((....)))).)))))) ( -24.99, z-score = -2.16, R) >droGri2.scaffold_14830 1978702 86 + 6267026 -------------------------------CUUCCAAGAGUUGCAAUCUCAUAUGCAUUAUUUUGCAUGUCUGGCGAUUUG-GCUAUUCAGGCGUAAAGGUCAAAAGAUCAAUGUUG -------------------------------.......(((((((......(((((((......)))))))...))))))).-(((.....))).....((((....))))....... ( -18.40, z-score = -0.28, R) >droMoj3.scaffold_6540 24628927 75 + 34148556 -----------------------------------------UUCUGCUCUCAUAUGCAUUAUUUUGCAUGUCUGGCGAUUUG-GCUGCUCAGGCGUAAAGGUCAAA-GAUCACUGUUG -----------------------------------------.((((((...(((((((......)))))))..)))(((((.-..(((....)))...)))))..)-))......... ( -16.60, z-score = 0.08, R) >droVir3.scaffold_12855 9562057 85 + 10161210 -------------------------------UUUUCUUUGGCUGCAAUCUCUUCUGCAUUAUUUUGCAUGUCUGCCGAUUUG-GCUAUUCAGGCGUAAAGGUCAAA-GAUCAAUGUUG -------------------------------...(((((((((............(((......)))(((((((((.....)-)).....))))))...)))))))-))......... ( -20.70, z-score = -1.40, R) >droAna3.scaffold_13340 19385648 81 - 23697760 -------------------------------------AGGAAUGCAGUCUCAUAUGCAUUAUUUUGCAUGUCUGGCGAUUUGGGCAACUCAAGCGUAAAGGUCAAAAGAUCAAUGUUG -------------------------------------....((((.(((..(((((((......)))))))..)))...((((....).)))))))...((((....))))....... ( -20.90, z-score = -1.46, R) >droWil1.scaffold_181089 12131107 118 - 12369635 AGAAGGUCUGUCUGUCUUUCUUUAGCUCCCUUCACCCUCGUAUGCAUUCUCAUAUGCAUUAUUUUGCAUGUCUGGCGAUUUAAGCUGUUCAAGCGUAAAGGUCAAAAGAUCAAUGUUG .(((((...(.(((........))))..)))))..........(((((.(((((((((......))))))).((((..((((.(((.....))).)))).))))...))..))))).. ( -24.80, z-score = -0.87, R) >droPer1.super_3 5653017 97 + 7375914 -------------------ACCGUACAGUCGAGCAGUACA--UGCAACCUCAUAUGCAUUAUUUUGCAUGUCUGGCAAUUUAAGCAAUUCAUGCGUAAAGGUCAAAAGAUCAACGCUG -------------------......(((.((.(((.....--)))..((..(((((((......)))))))..))...((((.(((.....))).))))((((....))))..))))) ( -21.50, z-score = -0.66, R) >dp4.chr2 22877526 97 + 30794189 -------------------ACCGUACAGUCGAGCAGUACA--UGCAACCUCAUAUGCAUUAUUUUGCAUGUCUGGCAAUUUAAGCAAUUCAUGCGUAAAGGUCAAAAGAUCAACGCUG -------------------......(((.((.(((.....--)))..((..(((((((......)))))))..))...((((.(((.....))).))))((((....))))..))))) ( -21.50, z-score = -0.66, R) >droSim1.chr3R 14222396 95 - 27517382 ---------------------AGAGUCUCCCGACCAUAUA--UGCAAUCUCAUAUGCAUUACUUUGCAUGUCUGGCGAGUUAAGGAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUU ---------------------.((((.(((((.(((.(((--(((((................)))))))).)))))......)))))))((((((...((((....)))).)))))) ( -27.39, z-score = -2.96, R) >droSec1.super_0 7266907 95 - 21120651 ---------------------AGAGUCUCCCGACCAUAUA--UGCAAUCUCAUAUGCAUUACUUUGCAUGUCUGGCGAGUUAAGGAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUU ---------------------.((((.(((((.(((.(((--(((((................)))))))).)))))......)))))))((((((...((((....)))).)))))) ( -27.39, z-score = -2.96, R) >droYak2.chr3R 12410566 95 + 28832112 ---------------------AGAGUCUCCCGACCAUAUA--UGCAAUCUCAUAUGCAUUACUUUGCAUGUCUGGCGAGUUAAGGAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUU ---------------------.((((.(((((.(((.(((--(((((................)))))))).)))))......)))))))((((((...((((....)))).)))))) ( -27.39, z-score = -2.96, R) >droEre2.scaffold_4770 4223906 93 - 17746568 -----------------------AGAGUCCGGACCAUACA--UGCAAUCUCAUAUGCAUUACUUUGCAUGUCUGGCGAGUUAAGGAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUA -----------------------.((((((...(((.(((--(((((................)))))))).)))........)).)))).(((((...((((....)))).))))). ( -26.59, z-score = -2.57, R) >consensus ______________________GAG__UCC_GACCAUAUA__UGCAAUCUCAUAUGCAUUAUUUUGCAUGUCUGGCGAUUUAAGCAACUCAAGCGUAAAGGUCAAAAGAUCAACGCUG ..........................................(((......(((((((......)))))))...)))..............(((((...((((....)))).))))). (-13.26 = -13.00 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:42 2011