| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,091,843 – 8,091,941 |
| Length | 98 |
| Max. P | 0.606662 |
| Location | 8,091,843 – 8,091,941 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.39 |
| Shannon entropy | 0.33549 |
| G+C content | 0.34442 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.44 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8091843 98 + 27905053 AACAAAAGCUGAGCACUAAACA--AGCAGUAAGUGCAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACGCCCACAUUGUUAUUGGCACAAAU .......((..((((((..((.--....)).))))).((..(((((.....)))))((((((((.....))))...)))))).......)..))...... ( -20.40, z-score = -0.85, R) >droSim1.chr3R 14221082 99 - 27517382 -AACAUAGCUGAGCACUAAACACAAGCAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU -......(((..............))).....((((((((((((((.....)))))((((((((.....))))...))))......))))).)))).... ( -17.34, z-score = -0.30, R) >droSec1.super_0 7265594 98 - 21120651 -ACCAAAGCUGAGCACUAAACACAA-CAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU -......(((.((((....((((..-......)))).((..(((((.....)))))((((((((.....))))...))))))..))))...)))...... ( -17.50, z-score = -0.59, R) >droYak2.chr3R 12409203 100 + 28832112 AACUAAGGCUGAGCACUAAAAACAAGCAAUGAGUGUAGUAAAAUUCAGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCAACUUAUUAUUGGCACAAAU .......((..((((((..............)))))............(((((.((((((((((.....))))...)))))).))))).)..))...... ( -19.44, z-score = -1.38, R) >droEre2.scaffold_4770 4222588 74 - 17746568 --------------------------UACUAGGUGCAGUAAAAUUCGGAAUGAAUUGGGUUCAAUCAAUUCGAAACACCCACCUUAUUAUUGGCACAAAU --------------------------......((((((((((((((.....)))))((((....((.....))...))))......))))).)))).... ( -13.90, z-score = -0.94, R) >consensus _ACCAAAGCUGAGCACUAAACACAAGCAAUAAGUGUAGUAAAAUUCUGAAUGAAUUGGGUUCAAUCAAUUUGAAACACCCACAUUGUUAUUGGCACAAAU ................................((((((((((((((.....)))))((((((((.....))))...))))......))))).)))).... (-15.64 = -15.44 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:41 2011