| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,089,418 – 8,089,526 |
| Length | 108 |
| Max. P | 0.796105 |
| Location | 8,089,418 – 8,089,526 |
|---|---|
| Length | 108 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 89.20 |
| Shannon entropy | 0.20866 |
| G+C content | 0.39665 |
| Mean single sequence MFE | -27.19 |
| Consensus MFE | -23.68 |
| Energy contribution | -24.60 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8089418 108 - 27905053 -GGUGUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGA -.((((.....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))...))))............ ( -28.20, z-score = -2.28, R) >droSim1.chr3R 14218558 108 + 27517382 -GGUGUGCGAGUGUUAUGUUAUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGA -.((((.....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))...))))............ ( -28.20, z-score = -2.57, R) >droSec1.super_0 7263237 108 + 21120651 -GGUGUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGA -.((((.....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))...))))............ ( -28.20, z-score = -2.28, R) >droYak2.chr3R 12406734 108 - 28832112 -GGUGUGCGAGUGUUGUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGCGGA -.((((.....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))...))))............ ( -28.60, z-score = -1.75, R) >droEre2.scaffold_4770 4220115 108 + 17746568 -GGUGUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUACAGGAGGA -.((((.....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))...))))............ ( -28.20, z-score = -1.70, R) >droAna3.scaffold_13340 19382229 107 + 23697760 CGGCCUGCGAGUGCCGUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAGGAACACAAUGAGCGGA-- ....((((..((((((((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..)))))))))))....))..))).....)))).-- ( -26.70, z-score = 0.30, R) >dp4.chr2 22873321 100 - 30794189 ---UGUGUGUGUGUUGUGU----AAGGGAAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAACAAGCGGA-- ---(((((..(((((((((----((.((((..((.......)).))))(..(((((((.....)))))))..)..))))))))))).......))))).........-- ( -24.70, z-score = -0.99, R) >droPer1.super_3 5648822 100 - 7375914 ---UGUGUGUGUGUUGUGU----AAGGGAAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAACAAGCGGA-- ---(((((..(((((((((----((.((((..((.......)).))))(..(((((((.....)))))))..)..))))))))))).......))))).........-- ( -24.70, z-score = -0.99, R) >consensus _GGUGUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGA ...((((....(((.(((((((((((((((..((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))))........... (-23.68 = -24.60 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:39 2011