| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,075,783 – 8,075,852 |
| Length | 69 |
| Max. P | 0.893408 |
| Location | 8,075,783 – 8,075,852 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 69.57 |
| Shannon entropy | 0.59661 |
| G+C content | 0.47107 |
| Mean single sequence MFE | -18.06 |
| Consensus MFE | -10.28 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893408 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8075783 69 - 27905053 AGGCCGCAUACCCAUGCACUCGGUUUAUUCUAGGAUGGACUGGAAUUAUUGGCCCGUUUU-----GGAUUUUUG .((((((((....))))..((((((((((....)))))))))).......))))......-----......... ( -20.30, z-score = -1.67, R) >droSim1.chr3R 14204558 69 + 27517382 AGGCCGCAUACCCAUGCACUCGGUUUAUUCUAGGAUGGACUGGAAUUAUUGGCCCGUUUU-----GGAUUUUUG .((((((((....))))..((((((((((....)))))))))).......))))......-----......... ( -20.30, z-score = -1.67, R) >droSec1.super_0 7222690 69 + 21120651 AGGCCGCAUACCCAUGCACUCGGUUUAUUCCAGGAUGGACUGGAAUUAUUGGCCCGUUUU-----GGAUUUUUG .((((((((....))))..((((((((((....)))))))))).......))))......-----......... ( -20.30, z-score = -1.35, R) >droYak2.chr3R 12392817 69 - 28832112 AGGCCGCAUACCCAUGCACUCGACUUAUUCUAGGAUGGACUGGAAUUAUUGGCCCGUUCU-----GGAUUUUUG .((((((((....)))).........(((((((......)))))))....))))......-----......... ( -17.80, z-score = -1.16, R) >droEre2.scaffold_4770 4203042 69 + 17746568 AGGCCGCAUACCUAUGCACUCGUCUUAUUCCAGGAUGGACUGGAAUUAUUGGCCCGUUCU-----GGAUUUUUG .((((((((....)))).........(((((((......)))))))....))))......-----......... ( -20.30, z-score = -1.77, R) >droAna3.scaffold_13340 19368453 54 + 23697760 ---------------ACGGCACUAUUUUCUGGGCAGGGACUGGAAAUAUUGGCCCAUUCU-----GGAUUUUUG ---------------..(((.....((((..(.......)..)))).....)))......-----......... ( -11.30, z-score = -0.35, R) >droGri2.scaffold_14830 1958191 72 - 6267026 ACUUUGGGCAGCUGUUUGGCCCUUUCCCACCGAAAAAUACUGGAAAUAUUGGCUUAUACUCAAGCGGGCCUU-- .....((((....))))((((((((((..............))))).....((((......)))))))))..-- ( -16.14, z-score = 0.60, R) >consensus AGGCCGCAUACCCAUGCACUCGGUUUAUUCCAGGAUGGACUGGAAUUAUUGGCCCGUUCU_____GGAUUUUUG .((((((((....)))).........(((((((......)))))))....)))).................... (-10.28 = -10.83 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:38 2011