| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,074,935 – 8,075,038 |
| Length | 103 |
| Max. P | 0.608157 |
| Location | 8,074,935 – 8,075,038 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 62.04 |
| Shannon entropy | 0.64000 |
| G+C content | 0.52477 |
| Mean single sequence MFE | -22.34 |
| Consensus MFE | -11.56 |
| Energy contribution | -11.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.44 |
| Mean z-score | -0.62 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8074935 103 - 27905053 AAAAGCAGCCACAAUUAGCCGACAGUUCGAAGUCGGCAAAUGACAAACAAAUGAGCAGCAGGGUAACCCAAGUAAGUGGAGCUGUGGGGGGGGGGGGGAAACC ....(((((..((.(((((((((........)))))).......................(((...)))...))).))..)))))..........((....)) ( -27.20, z-score = -0.58, R) >droSec1.super_0 7221853 95 + 21120651 AAAAGCAGCCACAAUUAGCCGGCAGUUCGAAGUCGGCAAAUGACAAACAAAUGAGCAGCAUGGCGACCCAAGUAAGUGGAGCUGUGGGGGAAAAC-------- .......(((.......((((((........)))))).............(((.....))))))..(((((((.......))).)))).......-------- ( -22.80, z-score = -0.01, R) >droYak2.chr3R 12391953 87 - 28832112 -AAAGCAGCCACAAUUAGCCGGCAGUUCGAAGUCGGCAAAUGACAAACAAAUGAGCAG---GGAAACCCAAGCGACUUGAGCUCUGGGGGG------------ -.......(((......((((((........))))))...............((((.(---(....))((((...)))).)))))))....------------ ( -24.60, z-score = -0.82, R) >droEre2.scaffold_4770 4202213 81 + 17746568 -------GCCACAAUUAGCCGGCAGUUCGAAGUCGGCAAAUGACAAACAAAUGAGCAG---GGCAACCCAAGUAAGUUGAGCUCUGGGGGG------------ -------.(((......((((((........))))))...............((((.(---(....))(((.....))).)))))))....------------ ( -22.30, z-score = -0.59, R) >droVir3.scaffold_12855 9539481 80 - 10161210 ------CCCUGCCCCCACCCCUUCCCCUGAAAAUUGUUGGCGACAAUUAAAUGAAAGCCACUGCGGCAGAGAUCAGACGAAGAGAA----------------- ------..............((((..((((.(((((((...)))))))........(((.....))).....))))..))))....----------------- ( -14.80, z-score = -1.11, R) >consensus _AAAGCAGCCACAAUUAGCCGGCAGUUCGAAGUCGGCAAAUGACAAACAAAUGAGCAGCA_GGCAACCCAAGUAAGUGGAGCUGUGGGGGG____________ .............(((.((((((........)))))).))).........................(((((((.......))).))))............... (-11.56 = -11.84 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:37 2011