| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,067,914 – 8,068,024 |
| Length | 110 |
| Max. P | 0.507401 |
| Location | 8,067,914 – 8,068,024 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.98 |
| Shannon entropy | 0.14674 |
| G+C content | 0.37756 |
| Mean single sequence MFE | -29.28 |
| Consensus MFE | -23.98 |
| Energy contribution | -23.85 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507401 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8067914 110 + 27905053 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGGUCAACAAUC --------...(((((((.(((--((......(((.((((((......)))))))))....((((((((....))))))))............))((......)).))).)))))))... ( -27.80, z-score = -1.29, R) >droEre2.scaffold_4770 4195252 110 - 17746568 --------UGGUGUUGGCGUUU--GGCUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUGCAGUUCAAGAGGUCAACAAUC --------...(((((((.(((--((((....(((.((((((......)))))))))....((((((((....))))))))........))))..((......)).))).)))))))... ( -29.30, z-score = -1.23, R) >droYak2.chr3R 12384842 110 + 28832112 --------UGGUGUUGGCGUUU--GGUUAUUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGGUCAACAAUC --------...(((((((.(((--((......(((.((((((......)))))))))....((((((((....))))))))............))((......)).))).)))))))... ( -27.80, z-score = -1.37, R) >droSec1.super_0 7214814 110 - 21120651 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGGUCAACAAUC --------...(((((((.(((--((......(((.((((((......)))))))))....((((((((....))))))))............))((......)).))).)))))))... ( -27.80, z-score = -1.29, R) >droSim1.chr3R 14196730 110 - 27517382 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGGUCAACAAUC --------...(((((((.(((--((......(((.((((((......)))))))))....((((((((....))))))))............))((......)).))).)))))))... ( -27.80, z-score = -1.29, R) >dp4.chr2 22847051 110 + 30794189 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUCAAGUCCCGAUACAGUUCAAGAGUUCAACAAUC --------..(((((((..(((--(((.....(((.((((((......)))))))))....((((((((....))))))))....))))))..))))))).................... ( -29.30, z-score = -1.85, R) >droPer1.super_3 5625105 110 + 7375914 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUCAAGUCCCGAUACAGUUCAAGAGUUCAACAAUC --------..(((((((..(((--(((.....(((.((((((......)))))))))....((((((((....))))))))....))))))..))))))).................... ( -29.30, z-score = -1.85, R) >droWil1.scaffold_181089 12088102 112 - 12369635 --------UGGUGUUGGCAUUUUGUGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUACGCAAUUAUUUGAUUGCGUUUCUAUUAAGUACCGAUACAAGUCAAAAGUUCAACAAUC --------..(((((((.((((.(((......(((.((((((......)))))))))....((((((((....))))))))...))).)))).))))))).................... ( -25.90, z-score = -1.35, R) >droAna3.scaffold_13340 19360609 110 - 23697760 --------UGGUGUUGGCGUUU--GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGUUCAACAAUC --------..(((((((..(((--(((.....(((.((((((......)))))))))....((((((((....))))))))....))))))..))))))).................... ( -27.20, z-score = -1.34, R) >droVir3.scaffold_12855 9526416 117 + 10161210 GUUGCAUUUGGUGCUGGCGUU---GCUUAAUUUGCUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUACCGAUACAGUUCAAGAGUUCAACAAUC ((((.((((...((((.((.(---(((((((.((.(((((((......)))))))))....((((((((....))))))))....)))))))).))...))))....)))).)))).... ( -35.10, z-score = -2.68, R) >droMoj3.scaffold_6540 24596115 117 + 34148556 GUUGGAUUUGGUGUUGGCGUU---GCUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCCAUUAAGUACCGAUGCAGUUCAAGAGUUCAACAAUC (((((((((.(((((((...(---(((((((.(((.((((((......)))))))))....((((((((....))))))))....))))))))))))))).......))))))))).... ( -36.00, z-score = -2.96, R) >droGri2.scaffold_14830 1947263 117 + 6267026 GUUGGUGUUGGUGUUGGCGUU---GUUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUACCGAUACAGUUCAAGAGUUCAACAAUC (((((((...(((((((..((---........(((.((((((......)))))))))....((((((((....))))))))........))..)))))))....)).....))))).... ( -28.00, z-score = -0.86, R) >consensus ________UGGUGUUGGCGUUU__GGUUAAUUUGUUGCUAUAUUUGAUUGUGGCACACUUUGCGCAAUUAUUUGAUUGCGUUUCUAUUAAGUCCCGAUACAGUUCAAGAGUUCAACAAUC ..........(((((((...............((.(((((((......)))))))))....((((((((....))))))))............))))))).................... (-23.98 = -23.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:36 2011