| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,054,536 – 8,054,628 |
| Length | 92 |
| Max. P | 0.572718 |
| Location | 8,054,536 – 8,054,628 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 60.41 |
| Shannon entropy | 0.78899 |
| G+C content | 0.40470 |
| Mean single sequence MFE | -19.89 |
| Consensus MFE | -5.77 |
| Energy contribution | -5.80 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.572718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8054536 92 + 27905053 CAUUGG-CAAAUUAAACAGAUUCUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCAGGGAACAGC-GACCAGA------UACGAAU--UCUCAGUCGCCCAGAU------------ ..((((-((.........((((((((((((.....))))))))).))).))))))((....((-(((.(((------.......--)))..)))))))....------------ ( -21.70, z-score = -2.48, R) >droSim1.chr3R 14185299 92 - 27517382 CAUUGG-CAAAUUAAACAGAUUCUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAACAGC-GACCAGA------UACGAAU--UCGCAGUCGCCCAGAU------------ ...(((-((.........((((((((((((.....))))))))).))).))))).((....((-(((..((------.......--))...)))))))....------------ ( -20.70, z-score = -2.42, R) >droSec1.super_0 7203434 92 - 21120651 CAUUGG-CAAAUUAAACAGAUUCUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCAGGGAACAGC-GACUAGA------UACGAAU--UCGCAGUCGCCCAGAU------------ ..((((-((.........((((((((((((.....))))))))).))).))))))((....((-((((.((------.......--))..))))))))....------------ ( -23.30, z-score = -2.96, R) >droYak2.chr3R 12371365 95 + 28832112 CAUUGG-CAAAUUAAACAGAUUCUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAACAGC-GGCCAGA-----AUUCGUAUCUUCGCAUUCGCCCAGAU------------ ....((-(..........((((((((((((.....))))))))).)))..(((.(......).-)))..((-----((.((......)).))))))).....------------ ( -22.10, z-score = -1.77, R) >droEre2.scaffold_4770 4181971 98 - 17746568 CAUUGG-CAAAUUAAACAGAUUCUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAACAGC-GGCCAGAUACGAAUUCGCAU--UCGCAUUCGCCCGGAU------------ ....((-(..........((((((((((((.....))))))))).)))..(((.(......).-)))..((..(((((....))--)))...))))).....------------ ( -21.70, z-score = -0.95, R) >droAna3.scaffold_13340 19340701 93 - 23697760 CAUUGGGCAAAUUAAACAGAUUUUUAUUUGCAAAUCAGAUAAGA--UCAUGCCACAGAGCAGA-GCGCAGAUACAGAUACACGCGGAUACUGAUUC------------------ ......((((((.(((.....))).)))))).((((((......--((.(((......)))))-(((...((....))...))).....)))))).------------------ ( -14.80, z-score = -0.52, R) >dp4.chr2 22833778 111 + 30794189 CAUUGGGCAAAUUAAACAGAUUUUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAGCACA-GUGCAGAUACC--CAGAUGCAGAUACAGAUGCCCAGAUACUUGUGUUGUG ..(((((((...........((((((((((.....))))))))))(((.(((......)))..-.((((......--....))))))).....))))))).............. ( -22.20, z-score = -0.13, R) >droPer1.super_3 5611680 111 + 7375914 CAUUGGGCAAAUUAAACAGAUUUUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAGCACA-GUGCAGAUACC--CAGAUGCAGAUACAGAUGCCCAGAUACUUGUGUUGUG ..(((((((...........((((((((((.....))))))))))(((.(((......)))..-.((((......--....))))))).....))))))).............. ( -22.20, z-score = -0.13, R) >droWil1.scaffold_181089 290044 74 + 12369635 --------CAGGGACAGAUUUUUUUAUUUGCAAAUCAGAUAAGCCAUGAAACAGGGUAAAAAG-AUCUUGGCCCAGUCUAAAG------------------------------- --------..(((..((((((((((((((.....(((.........)))....))))))))))-))))...))).........------------------------------- ( -17.40, z-score = -2.01, R) >droVir3.scaffold_12855 646813 94 - 10161210 -UGGGUCCAAAUAAAAAACAUUUUUAUUUACAAAUCAGAUAAGAGAUCUGAGAUCACAGCAAGCAGCUUAAACCAUUUGUAGAUAUGCAGCCAGG------------------- -(((.(.((...............((((((((((((((((.....))))))......(((.....))).......)))))))))))).).)))..------------------- ( -15.86, z-score = -0.92, R) >droMoj3.scaffold_6540 9563922 90 - 34148556 -UGUGGCCACAUGAAAUACAUUUUUAUUUGCAAAUCAGAUAAGAGAUCUUGGAUCAGAGCGAGCAGCUUGAACCAUAUGCAUGCAUCCAGC----------------------- -..(((...((((.......((((((((((.....))))))))))....(((.(((.(((.....)))))).)))....))))...)))..----------------------- ( -19.50, z-score = -0.29, R) >droGri2.scaffold_14830 4331844 87 - 6267026 -CGGGGCCAAAUGAAAUACAUUUUUAUUUGCAAAUCAGAUAAGAAAUCUGAGAUCACAGCAAGCAGCUUGAACCAUUUGUAGAAACGG-------------------------- -.((.((.((((((((.....))))))))))...((((((.....))))))..(((.(((.....)))))).))..............-------------------------- ( -17.20, z-score = -1.32, R) >consensus CAUUGG_CAAAUUAAACAGAUUUUUAUUUGCAAAUCAGAUAAGAGAUCAUGCCACGGAACAGC_GGCCAGA__CA__UACAAAU__UCACAGUCGCCCAGAU____________ ....................((((((((((.....))))))))))..................................................................... ( -5.77 = -5.80 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:32 2011