| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,022,729 – 8,022,789 |
| Length | 60 |
| Max. P | 0.997233 |
| Location | 8,022,729 – 8,022,789 |
|---|---|
| Length | 60 |
| Sequences | 5 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05643 |
| G+C content | 0.30333 |
| Mean single sequence MFE | -12.32 |
| Consensus MFE | -12.32 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.09 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.06 |
| SVM RNA-class probability | 0.997233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8022729 60 - 27905053 UUCCGCGCAUUAAUUCCCAGUAAUUUUGAAUAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... ( -12.20, z-score = -2.96, R) >droEre2.scaffold_4770 4147829 60 + 17746568 CUCUGCGCAUUAAUUCCCAGUAAUUUUGAAAAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... ( -12.10, z-score = -3.12, R) >droYak2.chr3R 12338847 60 - 28832112 CUCUGCGCAUUAAUUCCCAGUAAUUUUGAAAAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... ( -12.10, z-score = -3.12, R) >droSec1.super_0 7167144 60 + 21120651 CUCCGCGCAUUAAUUCCCAGUAAUUUUGAAUAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... ( -12.20, z-score = -3.14, R) >droSim1.chr3R 14148938 60 + 27517382 CUCCGCGCAUUAAUUCUCAGUAAUUUUGAAUAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... ( -13.00, z-score = -3.12, R) >consensus CUCCGCGCAUUAAUUCCCAGUAAUUUUGAAUAUAAAUUGUGCUGUGAAAAUGUGUUUUUA ....(((((((..(((.(((((..((((....))))...))))).))))))))))..... (-12.32 = -12.32 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:25 2011