| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,151,959 – 7,152,054 |
| Length | 95 |
| Max. P | 0.970570 |
| Location | 7,151,959 – 7,152,054 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.69 |
| Shannon entropy | 0.46052 |
| G+C content | 0.32161 |
| Mean single sequence MFE | -27.84 |
| Consensus MFE | -15.98 |
| Energy contribution | -16.35 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7151959 95 - 23011544 UACCAAUGAGAAAAUGUUUAACAUUGCAAGUUGGAACAUAAGUUUGGACAGACAUGCCAGAUU-------------------------AGUCUGUGUUUUAAUUUGCUGCAGCAUAUAAA .....(((....((((.....))))((((((((((((((((((((((.((....)))))))))-------------------------....))))))))))))))).....)))..... ( -24.10, z-score = -2.14, R) >droEre2.scaffold_4929 16067316 119 - 26641161 UGGCAAUGGGAAAAUGUUU-GCUUUGCAGGCUGGAACAUAAAUUGGGACAGAAAUUCCAGCUUCUGCUGUCAAAUGCUUUUCAAUGAAAAUCUGUGUUUCAGCUCUCUGCAGAAUAGAAA ..((((...........))-))((((((((((((((((((.((((..(.((......((((....)))).......)))..)))).......)))))))))))...)))))))....... ( -31.92, z-score = -0.97, R) >droSec1.super_3 2675478 119 - 7220098 UACCAAUAAGAAAAUGUUG-GAAAUGCAAGUUGGAACAUAAAUUUGGACAGACAUGUCAGAUUUUUCUGUCAAAUGCUUUUUUAAAAAAAAUUGUGUUUCAAUUUGCUUCGAAAAAUAAA ..((((((......)))))-)....(((((((((((((((((((((((((....))))(((....)))..)))))..(((((....)))))))))))))))))))))............. ( -30.30, z-score = -3.59, R) >droSim1.chr2L 6941311 119 - 22036055 UACCAAUAAGAAAAUGUUG-GAAAUGCAAGUUGGAACAUAAAUUUGGACAGAUAUGUCAGAUUUUUCUGUCAAAUGCUUAUUUAAAAAAAAUUGCGCUUCAAUUUGCUGCGAAAAAUAAA ..((((((......)))))-)....((((((((((.(.........((((((.............))))))....((..((((.....)))).))).))))))))))............. ( -25.02, z-score = -1.78, R) >consensus UACCAAUAAGAAAAUGUUG_GAAAUGCAAGUUGGAACAUAAAUUUGGACAGACAUGCCAGAUUUUUCUGUCAAAUGCUUUUUUAAAAAAAACUGUGUUUCAAUUUGCUGCAAAAAAUAAA .........................((((((((((((((((((((((.((....))))))))).............................)))))))))))))))............. (-15.98 = -16.35 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:01 2011