| Sequence ID | dm3.chr3R |
|---|---|
| Location | 8,000,361 – 8,000,468 |
| Length | 107 |
| Max. P | 0.845428 |
| Location | 8,000,361 – 8,000,468 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.19 |
| Shannon entropy | 0.45569 |
| G+C content | 0.41037 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -12.84 |
| Energy contribution | -13.14 |
| Covariance contribution | 0.30 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 8000361 107 - 27905053 ---------UCUUA-C-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGCCAC-UGGUACUCGUACUCUCACUCGUACUGGU ---------.....-.-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))-))))...)))....((-..((((..((......))..))))..)) ( -27.90, z-score = -2.51, R) >droSim1.chr3R 14125679 95 + 27517382 ---------UCUUA-C-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGGCAC-UGGUACUCGUAC-UGGU----------- ---------.....-(-((((.((((((((.((((((((((((((.......)))))..)))))))))..))))-))))...))).)).((-..(((....)))-..))----------- ( -27.20, z-score = -2.65, R) >droSec1.super_0 7144892 97 + 21120651 ---------UCUUA-C-CGACCGAAGCAAAACUUUUGCAUUUUCCCAUUUUCGGAAAACGUGCAAAAGGACUUC-UUUUCAUGUCGGCCACGUGGUACUCGCACGUGGU----------- ---------.....-(-((((.((((.....((((((((((((((.......)))))..))))))))).....)-)))....)))))(((((((.......))))))).----------- ( -33.20, z-score = -3.79, R) >droEre2.scaffold_4770 4125429 95 + 17746568 ---------UCUUA-C-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGCCGC-UGGUACUCGUACUCGU------------ ---------.....-.-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))-))))...)))....((-.((((....)))).))------------ ( -23.00, z-score = -1.37, R) >droAna3.scaffold_13340 19285751 91 + 23697760 ---------UCUUU-C-CGAACGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGCUCC-UUGUGGUCCUGC---------------- ---------.....-.-.....((((((((.((((((((((((((.......)))))..)))))))))..))))-))))((.(.(..(...-..)..).).)).---------------- ( -20.50, z-score = -0.90, R) >dp4.chr2 22773201 96 - 30794189 ---------UCUUACC-CGAAGCAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGCUAC-UGGUACUCCUCC-UGUU----------- ---------...((((-.(.((((..((...((((((((((((((.......)))))..)))))))))((....-...)).))..)))).)-.)))).......-....----------- ( -23.70, z-score = -2.11, R) >droPer1.super_3 5550231 96 - 7375914 ---------UCUUACC-CGAAGCAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGUCUGCUAC-UGGUACUCCUGC-UGUU----------- ---------...((((-.(.((((..((...((((((((((((((.......)))))..)))))))))((....-...)).))..)))).)-.)))).......-....----------- ( -23.70, z-score = -1.75, R) >droWil1.scaffold_181089 12017105 93 + 12369635 ---------CCUUGUU-C---UGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG-UUUUCAUGGCUCCUGCUCCUCGACUCCAUGGC------------- ---------.......-.---.((((((((.((((((((((((((.......)))))..)))))))))..))))-))))(((((.((.........))..)))))..------------- ( -21.30, z-score = -0.70, R) >droMoj3.scaffold_6540 9641977 96 + 34148556 -------UCUUCCACCAUAUGGGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGCUUUUCAUGCUUG-----UGUUGCGCGUAUUUGU------------ -------.....(((..((((..(((((((.((((((((((((((.......)))))..)))))))))..)))))))..))))...)-----))..............------------ ( -28.60, z-score = -2.68, R) >droVir3.scaffold_12855 738955 103 + 10161210 GCCAUUGUCUUUCACCGUUUGCGAACCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUUCAUGGUUG-----UGUUGCGCGUAUUUGU------------ .............(((((..((((((((...((((((((((((((.......)))))..)))))))))((........)).))))).-----))).))).))......------------ ( -21.90, z-score = -0.00, R) >droGri2.scaffold_14830 4401129 96 + 6267026 -------UCUUUCAGCGUAUGCGGAGCAAAACUUUAGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGCUUUUCAUGGUUG-----UGUUGCGCGUAUUUGU------------ -------.....(((.(((((((.((((.((((...(((((((((.......)))))))))(((((....))))).......)))).-----)))).)))))))))).------------ ( -27.90, z-score = -2.17, R) >consensus _________UCUUA_C_CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUG_UUUUCAUGUCUGCCAC_UGGUACUCGUACUUGU____________ ......................((((((((.((((((((((((((.......)))))..)))))))))..))))..))))........................................ (-12.84 = -13.14 + 0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:23 2011