| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,982,947 – 7,983,037 |
| Length | 90 |
| Max. P | 0.955770 |
| Location | 7,982,947 – 7,983,037 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 93.56 |
| Shannon entropy | 0.11050 |
| G+C content | 0.55925 |
| Mean single sequence MFE | -34.68 |
| Consensus MFE | -27.58 |
| Energy contribution | -28.26 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7982947 90 - 27905053 GAGGUAACACAAGCAGCCGCA--------GUAGCUGGGAAACCGAGCAAACGACGGCAACUGAGCUUGGUCAAAUGGAAUGCCCCAGCUCAGGCUUAC ..........((((.((((..--------((.(((((....)).)))..))..))))..(((((((.((.((.......)).)).))))))))))).. ( -35.60, z-score = -3.37, R) >droSim1.chr3R 14108225 90 + 27517382 GAGGUAACACAAGCAGCCGCA--------GUAGCUGGGAAACCGAGCAAACGACGGCAACUGAGCUUGGUCAAAUGGAAUGCCCCAGCUCAGGCUUAC ..........((((.((((..--------((.(((((....)).)))..))..))))..(((((((.((.((.......)).)).))))))))))).. ( -35.60, z-score = -3.37, R) >droSec1.super_0 7127247 86 + 21120651 GAGGUAACACAAGCAGCCGCA--------GUAGCUGGGAAACCGAGCAAACGACGGCAA----GCUUGGUCAAAUGGAAUGCCCCAGCUCAGGCUUAC (((......(((((.((((..--------((.(((((....)).)))..))..))))..----)))))......(((......))).)))........ ( -28.50, z-score = -1.53, R) >droYak2.chr3R 12297022 98 - 28832112 GAGGUAACACAAGCAGCCGCAGUAGCUGGGUAGCUGGGAAACCGAGCAAACGACGGCAACUGAGCUUGGUCAAAUGGAAUGCCCCAGCUCGGGCUUAC ..........((((.((((..((((((....))))((....))......))..))))..(((((((.((.((.......)).)).))))))))))).. ( -34.50, z-score = -1.27, R) >droEre2.scaffold_4770 4107530 90 + 17746568 GAGGUAACACAAGCAGCCGCA--------GUAGCUGGGCAACCGAGCAAACGACGGCAACUGAGCUUGGUCAAAUGGAAUGCCCAAGCUCAGGCUUAC ..........((((.((((..--------((.(((((....)).)))..))..))))..((((((((((.((.......)).)))))))))))))).. ( -39.20, z-score = -4.38, R) >consensus GAGGUAACACAAGCAGCCGCA________GUAGCUGGGAAACCGAGCAAACGACGGCAACUGAGCUUGGUCAAAUGGAAUGCCCCAGCUCAGGCUUAC ..........((((.(((((.........)).(((((....)).))).......)))..(((((((.((.((.......)).)).))))))))))).. (-27.58 = -28.26 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:22 2011