| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,979,617 – 7,979,667 |
| Length | 50 |
| Max. P | 0.817894 |
| Location | 7,979,617 – 7,979,667 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 81.60 |
| Shannon entropy | 0.33076 |
| G+C content | 0.41667 |
| Mean single sequence MFE | -11.23 |
| Consensus MFE | -6.91 |
| Energy contribution | -6.83 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.817894 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7979617 50 + 27905053 CGACUAACUAUGCGAAAAAUCGCAACUGAGCAGCGGAAAAUGUUCGCAAA ..........(((((....)))))........(((((.....)))))... ( -10.80, z-score = -1.27, R) >droPer1.super_3 5527148 50 + 7375914 ACAAGAACUAUGCGGAAAAUCGCAGCUGAAAAGUAGCAAUUUUCCACAAA ..........((.(((((((.((.(((....))).)).))))))).)).. ( -15.70, z-score = -4.50, R) >dp4.chr2 22750884 50 + 30794189 ACAAGAACUAUACGGAAAAUCGCAGCUGAAAAGUAGAAAUUUUCCACAAA .............(((((((..(.(((....))).)..)))))))..... ( -12.00, z-score = -4.34, R) >droEre2.scaffold_4770 4104097 50 - 17746568 CGACUAACUAUGCGAAAAAUCGCAACUGAGGAGCGGAAAAUGUGCGCAAA ...((.....(((((....)))))....))..(((.(.....).)))... ( -9.10, z-score = -0.60, R) >droYak2.chr3R 12293570 50 + 28832112 CGACUAACUAUGCGAAAAAUCGCAACUGAGCAGCGGAAAAUGUUCGCGAA ..........(((((....)))))........(((((.....)))))... ( -10.80, z-score = -0.90, R) >droSim1.chr3R 14104893 50 - 27517382 CGACUAACUAUGCGAAAAAUCGCAACUGAGCAGCGGAAAAUGUUUGCAAA ..........(((((....))))).....((((((.....)).))))... ( -9.00, z-score = -0.62, R) >consensus CGACUAACUAUGCGAAAAAUCGCAACUGAGCAGCGGAAAAUGUUCGCAAA ..........(((((....)))))........(((((.....)))))... ( -6.91 = -6.83 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:21 2011