| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,973,107 – 7,973,214 |
| Length | 107 |
| Max. P | 0.751209 |
| Location | 7,973,107 – 7,973,214 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.98 |
| Shannon entropy | 0.37335 |
| G+C content | 0.33097 |
| Mean single sequence MFE | -20.15 |
| Consensus MFE | -11.69 |
| Energy contribution | -11.72 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7973107 107 + 27905053 -----AUCACAGUCGAGCAGACAGCAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUUUUGUUGAAUCUCCUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......)))).......)))))........)))).. ( -21.94, z-score = -1.71, R) >droSim1.chr3R 14098473 107 - 27517382 -----AUCACAGUCGAGCAGACAGCAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUUUUGUUGAAUCUCCUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......)))).......)))))........)))).. ( -21.94, z-score = -1.71, R) >droSec1.super_0 7117443 107 - 21120651 -----AUCACAGUCGAGCAGACAGCAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUUUUGUUGAAUCUCCUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......)))).......)))))........)))).. ( -21.94, z-score = -1.71, R) >droYak2.chr3R 12286053 102 + 28832112 -----AUCACAGUCGAGCAGACAGCAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU-----GAUUCUCCUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......))))..))))-----)........)))).. ( -21.94, z-score = -2.15, R) >droEre2.scaffold_4770 4097779 102 - 17746568 -----AUCACAGUCGAGCAGACAGCAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU-----GAUUCUCCUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......))))..))))-----)........)))).. ( -21.94, z-score = -2.15, R) >droAna3.scaffold_13340 19258967 102 - 23697760 -----AUCACAGUCGAGCAGACAACAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU-----GAUUCUCUUCUGUCU -----...((((..((((((((......)))))))).(((((((-((((((..............))))))))((((......))))..))))-----)........)))).. ( -21.94, z-score = -2.47, R) >dp4.chr2 22744452 93 + 30794189 -----AUCACAGACGAGCAGACAACAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU-----GGUUCU--------- -----((((((((.((((((((......))))))))......((-((((((..............))))))))..............)))).)-----)))...--------- ( -20.74, z-score = -2.32, R) >droPer1.super_3 5520737 93 + 7375914 -----AUCACAGACGAGCAGACAACAAAGUUUGCUCAUAACAUU-GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU-----GGUUCU--------- -----((((((((.((((((((......))))))))......((-((((((..............))))))))..............)))).)-----)))...--------- ( -20.74, z-score = -2.32, R) >droWil1.scaffold_181089 11987407 87 - 12369635 -----GCUGCUGUC--GUCAUCAUCAAAGUUUGCUCAUAACAUU-GCGAAUCUU-GUCUAAAGUUGUUUGUAAAUAAUUUCUUUUAUUUUGUU-----GAU------------ -----.........--...((((.((((((............((-(((((((((-.....)))..))))))))............)))))).)-----)))------------ ( -11.05, z-score = 0.18, R) >droVir3.scaffold_12855 9382429 99 + 10161210 GAAAAACCAAAGGCACGCAGACAACAAAGUUUGCCCAUAACAUUUGCGAAUUCU-GUCUAAACUUGUUUGCAAAUAAUUUCUUUC-UUUUAUUUGGCCAAU------------ ...........(((..((((((......)))))).......((((((((((...-((....))..))))))))))..........-.........)))...------------ ( -21.60, z-score = -2.38, R) >droGri2.scaffold_14830 1832759 93 + 6267026 --GAAACCUAAGGCUCGCAGACAACAAAGUUUGCCCAUAACAUUUGCGAAUUCU-GUCUAAACUUGUUUGUAAAUAAUUUCUU-----UUAUUUUACCAAU------------ --((((.....((...((((((......)))))))).....((((((((((...-((....))..))))))))))..))))..-----.............------------ ( -15.90, z-score = -1.87, R) >consensus _____AUCACAGUCGAGCAGACAACAAAGUUUGCUCAUAACAUU_GCGAAUUUUCGUCUAAACUUGUUUGCAAAUAAUUUCUUUUAUUUUGUU_____GAUUCUC_UCUGUCU ................((((((((((((((((((...........))))))))).)).......))))))).......................................... (-11.69 = -11.72 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:20 2011