| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,969,841 – 7,969,893 |
| Length | 52 |
| Max. P | 0.613964 |
| Location | 7,969,841 – 7,969,893 |
|---|---|
| Length | 52 |
| Sequences | 9 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 96.58 |
| Shannon entropy | 0.07107 |
| G+C content | 0.46795 |
| Mean single sequence MFE | -14.90 |
| Consensus MFE | -13.71 |
| Energy contribution | -13.40 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613964 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7969841 52 + 27905053 UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). ( -15.80, z-score = -1.61, R) >droPer1.super_3 5517090 52 + 7375914 UGUGGUAAGCCACUUACCGUUAUCUGUUUAAUGAAACUGCUGCUUGGCAGCA .((((....))))....(((((......))))).....(((((...))))). ( -14.50, z-score = -1.42, R) >dp4.chr2 22740824 52 + 30794189 UGUGGUAAGCCACUUACCGUUAUCUGUUUAAUGAAACUGCUGCUUGGCAGCA .((((....))))....(((((......))))).....(((((...))))). ( -14.50, z-score = -1.42, R) >droAna3.scaffold_13340 19255481 52 - 23697760 UGCGGUAAGCCACUUACUGUUAUCUGCUUAAUGAAACUGCUGCUUGGUAGCA .((((((((...))))))))..................(((((...))))). ( -11.60, z-score = -0.15, R) >droEre2.scaffold_4770 4094262 52 - 17746568 UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). ( -15.80, z-score = -1.61, R) >droYak2.chr3R 12282475 52 + 28832112 UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). ( -15.80, z-score = -1.61, R) >droSec1.super_0 7114027 52 - 21120651 UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). ( -15.80, z-score = -1.61, R) >droSim1.chr3R 14095041 52 - 27517382 UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). ( -15.80, z-score = -1.61, R) >droMoj3.scaffold_6540 24463005 52 + 34148556 UGUGGUAUGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUCGGCAGCA .((((....))))....(((((......))))).....(((((...))))). ( -14.50, z-score = -1.44, R) >consensus UGCGGUAAGCCACUUACCGUUAUCUGCUUAAUGAAACUGCUGCUUGGCAGCA .((((((((...))))))))..................(((((...))))). (-13.71 = -13.40 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:19 2011