| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,965,228 – 7,965,294 |
| Length | 66 |
| Max. P | 0.780942 |
| Location | 7,965,228 – 7,965,294 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | reverse |
| Mean pairwise identity | 71.64 |
| Shannon entropy | 0.56683 |
| G+C content | 0.32969 |
| Mean single sequence MFE | -8.19 |
| Consensus MFE | -5.32 |
| Energy contribution | -4.76 |
| Covariance contribution | -0.57 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7965228 66 - 27905053 UUCAUUGAAAAGUUGCAAG--AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCUUAACAGAUAAGAAC ...........((((...(--(((((((((.......))))))..)))).....)))).......... ( -8.00, z-score = -0.52, R) >droSim1.chr3R 14090534 66 + 27517382 UUCAUUGAAAAGUUGCAAG--AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCUUAACAGAUAAGAAC ...........((((...(--(((((((((.......))))))..)))).....)))).......... ( -8.00, z-score = -0.52, R) >droSec1.super_0 7109612 66 + 21120651 UUCAUUGAAAAGUUGCAAG--AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCUUAACAGAUAAGAAC ...........((((...(--(((((((((.......))))))..)))).....)))).......... ( -8.00, z-score = -0.52, R) >droYak2.chr3R 12277893 66 - 28832112 UUCAUUGAAAAGUUGCAAG--AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCUUAACAGAUAAGAAC ...........((((...(--(((((((((.......))))))..)))).....)))).......... ( -8.00, z-score = -0.52, R) >droEre2.scaffold_4770 4089793 66 + 17746568 UUCAUUGAAAAGUUGCAAG--AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCCUAACAGAUAAGAAC ...........((((...(--(((((((((.......))))))..)))).....)))).......... ( -8.00, z-score = -0.85, R) >droAna3.scaffold_13340 19251306 54 + 23697760 ------------UUGCAAG--AAUUGUGUAAAUAGAAUGCACAGUAUUCUCCUUCCAAGGACAAAACU ------------.......--.((((((((.......))))))))....((((....))))....... ( -9.40, z-score = -1.25, R) >droVir3.scaffold_12855 9369395 62 - 10161210 -----UGGGUAACAAAAAAUCAAUUAUAUGAAAACCUCUAGUGAGUUGUGUAUAUAUUGAAGAAAGA- -----..............(((((.(((((.....(((....))).....)))))))))).......- ( -7.90, z-score = -0.72, R) >consensus UUCAUUGAAAAGUUGCAAG__AAUUGUGUAAAUAGAAUGCACAGAAUUCGCCCUUAACAGAUAAGAAC .......................(((((((.......)))))))........................ ( -5.32 = -4.76 + -0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:18 2011