| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,150,796 – 7,150,894 |
| Length | 98 |
| Max. P | 0.527590 |
| Location | 7,150,796 – 7,150,894 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 69.64 |
| Shannon entropy | 0.56005 |
| G+C content | 0.41767 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -9.16 |
| Energy contribution | -9.74 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7150796 98 - 23011544 --UGUAAAUAUUCAUACAUGUAGAGUAAAGGGGGAGAAGGGCA-----AUUUAGGGAG-CGACAAAAGCAGUUUGUUAGUUAAUCUGACAG-AAAACGGUUUGUCAG--- --......(((((.((....))))))).............((.-----.........)-)((((((.....((((((((.....)))))))-)......))))))..--- ( -16.60, z-score = -1.10, R) >droSec1.super_3 2674352 96 - 7220098 --UGUAAAUAUUCAUACAUGUAGAGUAGGGGGA--GAAGGGCA-----AUUUAGGGAG-CGACAAAAGCAGUUUGUUAGUUAAUCUGACAG-AAAACGGUUUGUCAG--- --(((.....(((.(((.......)))...)))--.....)))-----..........-.((((((.....((((((((.....)))))))-)......))))))..--- ( -18.60, z-score = -1.81, R) >droYak2.chr2L 16569694 96 + 22324452 --UGUAAAAAUUCAUACAUGCAUA-UAAGGGGGU-GAAGGGCG-----AUUUGGGGAG-CGACGAAAGCAGUUUGUUAGUUAAGCUGACAG-AAAACGGUUUGUCAG--- --........(((((...(.(...-...).).))-))).(((.-----..((((.(((-(..(....)..)))).))))....)))(((((-(......))))))..--- ( -19.20, z-score = -1.01, R) >droEre2.scaffold_4929 16066116 97 - 26641161 --UGUAAAAAUUCAUACAUGUAGA-AUAGGGGGUAAAAGGGCA-----AUUUGGGGAG-CGACAAAAGCAGUUUGUUAGUUAAGCUGACAG-AAAACGGUUUGUCAG--- --((((........)))).((...-.((((..((......)).-----.))))....)-)((((((.....((((((((.....)))))))-)......))))))..--- ( -17.40, z-score = -1.27, R) >droPer1.super_8 853020 103 + 3966273 --AACAUGCUCCCAGACGCACUCAAGAGGGGGAAUGGGAGGUGGCAGCAUUGUGGUAG-CGACGAUAGCAGUUUGUUAGUUAAUCUGACAG-AAAACUGUUUGUCAG--- --..(((.((((((..(.(.((....)).).)..)))))))))((.((......)).)-)(((((..((((((((((((.....)))))).-..)))))))))))..--- ( -32.50, z-score = -1.87, R) >droGri2.scaffold_15252 1484347 110 + 17193109 UAUACACAGAUAUACAUUUAUAAGAGUGGGAGGCACACACACACACUUACACUGAGAGAAAACGACGACAGGUUGCGAGCUAAUCUGACAGCAAAACUGUUUGUCAGACA ......(((.((((....)))).(((((.(.(.....).)...)))))...))).........((((((((.((((...(......)...))))..))).)))))..... ( -18.40, z-score = -0.31, R) >consensus __UGUAAAAAUUCAUACAUGUAGA_UAAGGGGGUAGAAGGGCA_____AUUUAGGGAG_CGACAAAAGCAGUUUGUUAGUUAAUCUGACAG_AAAACGGUUUGUCAG___ ............................................................((((((......(((((((.....)))))))........))))))..... ( -9.16 = -9.74 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:23:00 2011