| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,896,157 – 7,896,267 |
| Length | 110 |
| Max. P | 0.934852 |
| Location | 7,896,157 – 7,896,267 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 59.16 |
| Shannon entropy | 0.66401 |
| G+C content | 0.38796 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -10.43 |
| Energy contribution | -11.68 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.934852 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7896157 110 + 27905053 -----AACCCACCGAUUAAUAGAUUUAAUUGUAAUUUUCUAAUAUACCGAGAAUAAUUUA----UUUACUUACCUGCGCUGUAUUAUCCACUAUAAGUAUGGUGGCGACAACAGCGCCC -----.......(((((((.....)))))))..((((((.........))))))......----...........(((((((.....(((((((....))))))).....))))))).. ( -25.00, z-score = -3.35, R) >droWil1.scaffold_181096 1678150 96 + 12416693 -------------------UAUCCAUUCCAAAAUCCUUUUCUUUAGCCUCUCGUUAUCUC----UCAACUCACUUGAGCUGUAUUGUCCACAAUUAGAAUGGUGGCAACAACUGCUCCG -------------------..........................(((.(.((((....(----((((.....)))))(((.((((....)))))))))))).)))............. ( -13.00, z-score = -0.78, R) >droEre2.scaffold_4770 4019022 118 - 17746568 ACGACACUCCACGGAAUGAUAUAAA-GGUAGAAUAAAUGCUAAUUACCGAGAAUAAUUUUGAGCUUUACUUACCUGAGCUGUAUUAUCCACUAUAAGUAUGGUAGCCACCACGGCGCCG ............(((.(((((((.(-(((((..((((.(((......(((((....)))))))))))).))))))....))))))))))...........(((.(((.....)))))). ( -23.20, z-score = -0.70, R) >droYak2.chr3R 12206365 107 + 28832112 -----------AUUAUUUGCAAAGC-AAUAAUGUAAUUCUAAAGUAACGAGAAUAAUUUAAAGCUCUACUUGCCUGAGCUGUAUUAUCCACUAUGAGUAUGGUAGCCACAACGGCGCCG -----------((((((.((...))-))))))...((((...(((...((.((((......(((((.........))))).)))).)).)))..))))..(((.(((.....)))))). ( -18.40, z-score = 0.48, R) >consensus ___________C_GAUU_AUAUAAA_AAUAAAAUAAUUCUAAAUUACCGAGAAUAAUUUA____UCUACUUACCUGAGCUGUAUUAUCCACUAUAAGUAUGGUAGCCACAACGGCGCCG ...........................................................................(((((((.....(((((((....))))))).....))))))).. (-10.43 = -11.68 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:08 2011