Sequence ID | dm3.chr3R |
---|---|
Location | 7,857,898 – 7,857,996 |
Length | 98 |
Max. P | 0.968052 |
Location | 7,857,898 – 7,857,996 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.19 |
Shannon entropy | 0.33505 |
G+C content | 0.30326 |
Mean single sequence MFE | -13.71 |
Consensus MFE | -13.81 |
Energy contribution | -13.57 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.20 |
Mean z-score | -1.37 |
Structure conservation index | 1.01 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.968052 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7857898 98 + 27905053 UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--UAAGUUGCCACUCUUUUUUUAUACAACUCUUAUACAUUUUUGUUUUUUUUUUUU ..........(((..(((....)))..)))...(((((((....--....)))))))........................................... ( -12.90, z-score = -1.21, R) >droSim1.chr3R 13981550 96 - 27517382 UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--CAAGUUGCCACUCUUUUUUUAUACAACUCUUAUACAUUUU-GUUUUUUUUUUU- .........(((((((......((((.......(((((((....--....)))))))............)))).......))))))-)...........- ( -14.53, z-score = -1.58, R) >droSec1.super_0 7003174 95 - 21120651 UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--CAAGUUGCCACUAUUUUUUUAUACAACUCUUAUAUAUUUUUCUUUUUUUUU--- ..........(((..(((....)))..)))...(((((((....--....)))))))........................................--- ( -12.90, z-score = -1.40, R) >droYak2.chr3R 12168023 92 + 28832112 UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--GAAGUUGCCACUCUUUUUU-AUACAACUCUUAUAUAUAUU--UUUGUUUCU--- ...(((((((.(...((((...((..(......)..))))))).--)))))))............-....................--.........--- ( -13.10, z-score = -0.76, R) >droEre2.scaffold_4770 3980409 93 - 17746568 UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCGGUCUG--GAAGUUGCCACUCCUUUUUUAUACAACUCUUAUAUUUUUU-AUAUAUUUU---- ...(((((((.(...((((...((..(......)..))))))).--))))))).......................(((((.....-)))))....---- ( -13.40, z-score = -1.02, R) >droAna3.scaffold_13340 19145754 78 - 23697760 UAAUAACUUCGGAAUGACUUUUGUUGCUUCCUUGCGGCAGACUGUAGAAGUUGCUACUAUUUUU----AUUAUUUUUUUUUC------------------ ...(((((((((((((((....)))).)))).(((((....))))))))))))...........----..............------------------ ( -15.40, z-score = -2.24, R) >consensus UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG__GAAGUUGCCACUCUUUUUUUAUACAACUCUUAUAUAUUUU__UUUUUUUUU___ ..........(((..(((....)))..)))...(((((((.((.....)))))))))........................................... (-13.81 = -13.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:06 2011