Locus 9632

Sequence ID dm3.chr3R
Location 7,857,898 – 7,857,996
Length 98
Max. P 0.968052
window13212

overview

Window 2

Location 7,857,898 – 7,857,996
Length 98
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 82.19
Shannon entropy 0.33505
G+C content 0.30326
Mean single sequence MFE -13.71
Consensus MFE -13.81
Energy contribution -13.57
Covariance contribution -0.25
Combinations/Pair 1.20
Mean z-score -1.37
Structure conservation index 1.01
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.79
SVM RNA-class probability 0.968052
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 7857898 98 + 27905053
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--UAAGUUGCCACUCUUUUUUUAUACAACUCUUAUACAUUUUUGUUUUUUUUUUUU
..........(((..(((....)))..)))...(((((((....--....)))))))........................................... ( -12.90, z-score =  -1.21, R)
>droSim1.chr3R 13981550 96 - 27517382
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--CAAGUUGCCACUCUUUUUUUAUACAACUCUUAUACAUUUU-GUUUUUUUUUUU-
.........(((((((......((((.......(((((((....--....)))))))............)))).......))))))-)...........- ( -14.53, z-score =  -1.58, R)
>droSec1.super_0 7003174 95 - 21120651
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--CAAGUUGCCACUAUUUUUUUAUACAACUCUUAUAUAUUUUUCUUUUUUUUU---
..........(((..(((....)))..)))...(((((((....--....)))))))........................................--- ( -12.90, z-score =  -1.40, R)
>droYak2.chr3R 12168023 92 + 28832112
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG--GAAGUUGCCACUCUUUUUU-AUACAACUCUUAUAUAUAUU--UUUGUUUCU---
...(((((((.(...((((...((..(......)..))))))).--)))))))............-....................--.........--- ( -13.10, z-score =  -0.76, R)
>droEre2.scaffold_4770 3980409 93 - 17746568
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCGGUCUG--GAAGUUGCCACUCCUUUUUUAUACAACUCUUAUAUUUUUU-AUAUAUUUU----
...(((((((.(...((((...((..(......)..))))))).--))))))).......................(((((.....-)))))....---- ( -13.40, z-score =  -1.02, R)
>droAna3.scaffold_13340 19145754 78 - 23697760
UAAUAACUUCGGAAUGACUUUUGUUGCUUCCUUGCGGCAGACUGUAGAAGUUGCUACUAUUUUU----AUUAUUUUUUUUUC------------------
...(((((((((((((((....)))).)))).(((((....))))))))))))...........----..............------------------ ( -15.40, z-score =  -2.24, R)
>consensus
UAAUAACUUCGAAAUGACUUUUGUUGCUUCCUUGUGGCAGUCUG__GAAGUUGCCACUCUUUUUUUAUACAACUCUUAUAUAUUUU__UUUUUUUUU___
..........(((..(((....)))..)))...(((((((.((.....)))))))))........................................... (-13.81 = -13.57 +  -0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:06 2011