| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,856,050 – 7,856,149 |
| Length | 99 |
| Max. P | 0.621191 |
| Location | 7,856,050 – 7,856,149 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.54829 |
| G+C content | 0.54057 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -16.70 |
| Energy contribution | -19.60 |
| Covariance contribution | 2.90 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7856050 99 + 27905053 ------ACCACUUUGCGGGCGAACUCUUCGACUGCUAGUUGGUUGUUCACCAUCCUGGGCAGAUCGCGAGGGU-CUGAAAAAUGGUGGCCAUAGCCACGAACGCGC------------- ------........(((..(((.(((((((((((((...((((.....)))).....))))).))).))))))-).........(((((....))))))..)))..------------- ( -34.00, z-score = -0.84, R) >droSim1.chr3R 13979690 99 - 27517382 ------ACCACUUUCCGGACGAACUCUUCGACUGCUAGAUGGUUGUUCGCCAUCCUGGGCAGAUCGCGAGGGU-CUGAAAAAUGGUGGCCAUAGCCACGAACGCGC------------- ------..((.(((.(((((...(((..((((((((.((((((.....))))))...))))).))).))).))-))).))).))(((((....)))))........------------- ( -36.10, z-score = -1.77, R) >droSec1.super_0 7001341 99 - 21120651 ------ACCACUUUCCGGACGAACUCUUCGACUGCUAGAUGGUUGUUCGCCAUCCUGGGCAGAUCGCGAGGGU-CUGAAAAAUGAUGGCCAUAGCCACGAACGCGC------------- ------..((.(((.(((((...(((..((((((((.((((((.....))))))...))))).))).))).))-))).))).)).((((....)))).........------------- ( -32.30, z-score = -1.12, R) >droYak2.chr3R 12166177 99 + 28832112 ------ACCACUUUCCGGUCGGACUCGUCGACUGCUAGAUGGUUGUUCGCCAUCAUUGGCAGCGCGCGAGGGU-CUGAAGAAUGGAGGCCACAGCCAAGAACGCGG------------- ------.((....((((.((((((((.(((.((((((((((((.....))))))..))))))....)))))))-))))....))))(((....)))........))------------- ( -38.60, z-score = -1.45, R) >droEre2.scaffold_4770 3978563 99 - 17746568 ------ACCACUUUCUGGAGGAGCUCUCCGACUGCUGGAUGGUUGUUCGCCAUUAUUGGCAGCUCUCGAGGGU-CUGAAGAAUGGUGGCCACAGCCACGAAAGCGG------------- ------.((.((((((((((.....))))).........(((((((..(((((((((..((((((....))).-)))...))))))))).))))))).))))).))------------- ( -38.30, z-score = -1.57, R) >droPer1.super_3 5388589 119 + 7375914 AAUAAGACGUGUAAGCCUCGAUGCUAUUCUGCUACUAUUACCAUAUCUAUUAUCAUUUUCAGCUACCGCCGCUGUUUCUACUUUCCUUUCGUUGUUACUAUCUCCCUCACUGCUCAUAU ....(((...((((.(..(((.((......))...........................((((.......))))..............)))..)))))..)))................ ( -10.20, z-score = 0.66, R) >consensus ______ACCACUUUCCGGACGAACUCUUCGACUGCUAGAUGGUUGUUCGCCAUCAUGGGCAGAUCGCGAGGGU_CUGAAAAAUGGUGGCCAUAGCCACGAACGCGC_____________ ......((((.(((.(((....((((((((((((((.((((((.....))))))...))))).))).)))))).))).))).))))(((....)))....................... (-16.70 = -19.60 + 2.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:05 2011