| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,792,986 – 7,793,101 |
| Length | 115 |
| Max. P | 0.749345 |
| Location | 7,792,986 – 7,793,101 |
|---|---|
| Length | 115 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 73.55 |
| Shannon entropy | 0.58699 |
| G+C content | 0.46954 |
| Mean single sequence MFE | -34.65 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.29 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7792986 115 - 27905053 UUGUUGAUUUACUAGCUUAAAUCGAGUGUAAAAUGAGUUCGGCUCGCUUCGCGCGCUCAGGGCGCGUCCGUAUCUGCAUCCUGAUGAGCAUGUUCAUCGUGCUCAUCAUGAUGAU ...((((((((......)))))))).........((...(((........((((((.....)))))))))..))..((((.(((((((((((.....))))))))))).)))).. ( -40.00, z-score = -2.17, R) >droSim1.chr3R 13915843 115 + 27517382 UUGUUGAUUUACUAGCUUAAAUCGAUUGUAAAAUGAGUUCGGCUCGCUUCGCGCGCUCCGGCCGCGUCCGCAUCUGCAUCCUGAUGACCAUGUUCAUCGUGCUCAUCAUGAUGAU ..(((((((((......)))))))))........(((.....)))((..((((.((....))))))...)).....((((.((((((.((((.....)))).)))))).)))).. ( -34.80, z-score = -1.49, R) >droSec1.super_0 6943276 115 + 21120651 UUGUUGAUUUACUAGCUUAAAUCGAUUGUAAAAUGAGUUCGGCUCGCUUCGCGCGCUCCGGCCGCGUCCGCAUCUGCAUCCUGAUGACCAUGUUCAUCGUGCUCAUCAUGAUGAU ..(((((((((......)))))))))........(((.....)))((..((((.((....))))))...)).....((((.((((((.((((.....)))).)))))).)))).. ( -34.80, z-score = -1.49, R) >droYak2.chr3R 12105990 115 - 28832112 UUGGUCGUUUACUAGCUUAAAUCUAGUGUAAAAUGAGUUCGGCCCGCUUUGCGCGCUCCGGGCGCGUCCGCAUCUGCAUCCUGAUGAGCAUGUUCAUCGUGCUCAUCAUGAUGAU ..((.(((.((((((.......))))))........((((((..(((.....)))..))))))))).)).......((((.(((((((((((.....))))))))))).)))).. ( -44.40, z-score = -3.59, R) >droEre2.scaffold_4770 3918692 115 + 17746568 UUGGUCAUUUACUAGCUUAAAUCUAGUGUAAAAUGAGUUCGGCCCGCUUCGCGCGCUCCGGGCGCGUCCGCAUCUGCAUCCUGAUGAGCAUGUUCAUCGUGCUGAUCAUGAUGAU ....(((((((((((.......))))))...)))))((((((..(((.....)))..))))))((....)).....((((.((((.((((((.....)))))).)))).)))).. ( -38.70, z-score = -1.63, R) >droAna3.scaffold_13340 6167786 94 - 23697760 ---------------------UCUAAUUCAAAAUGAGUUCAACUCGCUUUGCGCGCACUGGACGCGUGCGUCUCUGCAUUCUGAUGAGCAUGUUCCUGGUGCUCAUAAUGAUGAU ---------------------.......((((.((((.....)))).))))...((((..(..((((((.((((........)).))))))))..)..))))((((....)))). ( -25.90, z-score = -0.72, R) >dp4.chr2 22543282 112 - 30794189 ---AUUUUAUUUAAACAACGAAUUGACUCACAAUGAGCUCGACUCGUUUUGCGCGCUCUGGGCGCGUUCGCAUCUGUAUUCUGAUGAGCAUGUUCGUGGUGCUCAUCAUGAUGAU ---.............(((((.(((((((.....))).)))).)))))..((((((.....)))))).........((((.((((((((((.......)))))))))).)))).. ( -36.10, z-score = -2.09, R) >droPer1.super_3 5322283 112 - 7375914 ---AUUUUAUUUAAACAACGAAUUGACUCACAAUGAGCUCGACUCGUUUUGCGCGCUCUGGGCGCGUUCGCAUCUGUAUUCUGAUGAGCAUGUUCGUGGUGCUCAUCAUGAUGAU ---.............(((((.(((((((.....))).)))).)))))..((((((.....)))))).........((((.((((((((((.......)))))))))).)))).. ( -36.10, z-score = -2.09, R) >droVir3.scaffold_13047 17544039 114 + 19223366 -UCACAGAAGCUAAAGUUAUUACUUUUGGACAAUGAGUUCGGCACGUUUUGCUCGUUCGGGCCGCGUUCGAAUAUGCAUUCUGAUGAGCAUGUUUGUUGUGCUCAUCAUGAUGAU -((.((((((.(((.....)))))))))))......((((((.((((...((((....)))).))))))))))...((((.(((((((((((.....))))))))))).)))).. ( -36.30, z-score = -2.05, R) >droMoj3.scaffold_6540 28450949 114 + 34148556 -UUGUAGAAUUCUAAGCUAUUCCAUUUGGACAAUGAGUACGGCACGUUUUGCCCGUUCGGGGCGCGUUAGGAUCUGUAUUCUGAUGAGCAUGUUUGUUGUCGUCAUUAUGAUGAU -.....((((........))))......(((((..((....((.......((((.....)))).(((((((((....))))))))).))...))..)))))(((((....))))) ( -27.60, z-score = 0.34, R) >droGri2.scaffold_15074 6083262 91 - 7742996 ------------------------AGAGAAAAAUGAGUACGGCUCGUUUUGCCCGUUCGGGGCGCGUUCGAAUCUGCAUACUGAUGAGCAUGUUUGUGGUGCUCCUUAUGAUGAU ------------------------.....((((((((.....))))))))...(((..(((((((...(((((.(((..........))).)))))..)))))))..)))..... ( -26.50, z-score = -0.71, R) >consensus _UGAUGAUUUACUAGCUUAAAUCUAGUGUAAAAUGAGUUCGGCUCGCUUUGCGCGCUCCGGGCGCGUCCGCAUCUGCAUCCUGAUGAGCAUGUUCAUCGUGCUCAUCAUGAUGAU ................................(((.((((....(((.....)))....)))).))).........((((.((((((.(((.......))).)))))).)))).. (-13.90 = -14.29 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:08:02 2011