| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,761,794 – 7,761,886 |
| Length | 92 |
| Max. P | 0.994665 |
| Location | 7,761,794 – 7,761,886 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 80.22 |
| Shannon entropy | 0.38760 |
| G+C content | 0.35331 |
| Mean single sequence MFE | -17.44 |
| Consensus MFE | -10.32 |
| Energy contribution | -11.41 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.994665 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7761794 92 - 27905053 AAUAAUUAUGCAGGAAAAUGUGCAAAUAAAAAACGAAAUUUGCCUUCGUC-CUUUUCCGGCUUCAUUUUCUUGUCCCUUUCCAUUACGCAACU .........(((((((((((.((....(((..(((((.......))))).-.)))....))..)))))))))))................... ( -18.50, z-score = -2.80, R) >droSim1.chr3R 13885959 92 + 27517382 AAUAAUUAUGCAAGAAAAUGUGCAAAUAAAAAACGAAAUUUGUCUUCGUC-GUUUUCCGGCUUCAUUUUCUUGUCCCUUUCCAUUACGCAACU .........(((((((((((.((....(((..(((((.......))))).-.)))....))..)))))))))))................... ( -19.90, z-score = -3.80, R) >droSec1.super_0 6912713 92 + 21120651 AAUAAUUAUGCAAGAAAAUGUGCAAAUAAAAAACGAAAUUUGUCUUCGUC-CUUUUCCGGCUUCAUUUUCUUGUCCCUUUCCAUUACGCAACU .........(((((((((((.((....(((..(((((.......))))).-.)))....))..)))))))))))................... ( -18.80, z-score = -3.96, R) >droYak2.chr3R 12173953 92 + 28832112 AAUAAUUAUGCAAGAAAAUGUGCCAAGAAAAAAUGAAAUUUGUCUUCGUC-CUUUUCCGGCUUCAUUUUCUUGGCCCAUUCCAUUACCCAACU ..........((((((((((.(((..(((((.(((((.......))))).-.))))).)))..)))))))))).................... ( -20.70, z-score = -3.46, R) >droEre2.scaffold_4770 3887857 92 + 17746568 AAUAAUUAUGCAAGAAAAUGUGCAAAUAAAAACCGAAAUUUGUCUUCGUC-CAUUUCCGGCUUCAUUUUCUUGUCCCCUUCCAUUACCCAACU .........(((((((((((.((..........((((.......))))..-........))..)))))))))))................... ( -16.05, z-score = -3.67, R) >droAna3.scaffold_12911 2429220 73 - 5364042 AAUAAUUAUGCAGGGAAAUGUUCGAAAUAAAAAAAAAGUUCGCCCUGAUUGCGUUUGCUUCUUCGUUCUCCCU-------------------- ...........(((((...(..((((.........((((.(((.......)))...)))).))))..))))))-------------------- ( -10.70, z-score = -0.20, R) >consensus AAUAAUUAUGCAAGAAAAUGUGCAAAUAAAAAACGAAAUUUGUCUUCGUC_CUUUUCCGGCUUCAUUUUCUUGUCCCUUUCCAUUACGCAACU .........(((((((((((.((.........(((((.......)))))..........))..)))))))))))................... (-10.32 = -11.41 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:59 2011