| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,747,640 – 7,747,776 |
| Length | 136 |
| Max. P | 0.518007 |
| Location | 7,747,640 – 7,747,776 |
|---|---|
| Length | 136 |
| Sequences | 5 |
| Columns | 136 |
| Reading direction | reverse |
| Mean pairwise identity | 91.36 |
| Shannon entropy | 0.15030 |
| G+C content | 0.40563 |
| Mean single sequence MFE | -26.49 |
| Consensus MFE | -18.80 |
| Energy contribution | -19.60 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518007 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7747640 136 - 27905053 CCCCAAAAUGCAAGUCUUAAUUUCAUAUUUUACUUGCAUUUGUGUAUAUCCAUCUGCUUUGUUCUUUUCCCUGAAGCGGCGACUAAUGCAGACGUCCAGCAUUUUAGUCCAAUUCCAUGCUCACAUUCAUCUCCAG .....((((((((((...(((.....)))..))))))))))(.((((......(((((((............))))))).(((((((((.........))))..))))).......)))).).............. ( -25.60, z-score = -2.44, R) >droSim1.chr3R 13870611 135 + 27517382 -CCCCAAAUGCAAGUCUUAAUUUCAUAUUUUACUUGCAUUUGUGUAUAUCCAGCUGCUUUGUUCUUUUGCCUGAAGCACCGACUAAUGCAGACGUCCAGCAUUUUAGUCCAACUCCAAGCUCACAUUCAACUCCAG -...(((((((((((...(((.....)))..))))))))))).........(((((((((((......))..)))))...(((((((((.........))))..)))))........))))............... ( -27.30, z-score = -2.71, R) >droSec1.super_0 6898687 132 + 21120651 -CCCCAAAUGCAAGUCUUAAUUUCAUAUUUUACUUGCAUUUGUGUAUAUCCAGCUGCUUUGUUCUUUUGCCUGAAGCACCGACUAAUGCAGACGUC---CAUUUUAGUCCAAUUCCAAGCUCACAUUCAACUCCAG -...(((((((((((...(((.....)))..))))))))))).........(((((((((((......))..)))))...((((((..........---....))))))........))))............... ( -24.54, z-score = -2.36, R) >droYak2.chr3R 12159804 135 + 28832112 -CCUAAAAUGCUAGAUUUAAUUUCAUAUAUUACUUGCAUUUGAAUACAUCCAGCUGCUUUGUUCUUUUGCCUGAAGCGCCGACUAAUGCAGACGUCCAGCAUUUUAGUCCAGCUCCAUGCUCACAUUCAACUCCAG -.((((((((((.(((.((((.......)))).(((((((((........))((.(((((((......))..))))))).....)))))))..))).))))))))))...(((.....)))............... ( -23.50, z-score = -0.53, R) >droEre2.scaffold_4770 3873559 135 + 17746568 -GCUAAAAUGCAAGUCUUAAUUUCAUAUUUUACUGGCAUUUGUAUAUAUCCAGCCGCUUUGUUCUUUUGCCUGAAGCGGCGACUAAUGCAGACGUCCAGCAUUUUAGUCCAUUUCCAUGCUCAUAUUCAACUCCAG -((((((((((.(((...(((.....)))..)))(((.(((((((.......((((((((((......))..)))))))).....))))))).)))..))))))))))............................ ( -31.50, z-score = -2.63, R) >consensus _CCCAAAAUGCAAGUCUUAAUUUCAUAUUUUACUUGCAUUUGUGUAUAUCCAGCUGCUUUGUUCUUUUGCCUGAAGCGCCGACUAAUGCAGACGUCCAGCAUUUUAGUCCAAUUCCAUGCUCACAUUCAACUCCAG .....((((((((((...(((.....)))..))))))))))..........(((((((((............))))))..(((((((((.........))))..))))).........)))............... (-18.80 = -19.60 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:54 2011