| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,743,393 – 7,743,501 |
| Length | 108 |
| Max. P | 0.972136 |
| Location | 7,743,393 – 7,743,501 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.13 |
| Shannon entropy | 0.30476 |
| G+C content | 0.38972 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -10.76 |
| Energy contribution | -10.70 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.87 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.972136 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7743393 108 - 27905053 --GGACUGACCGUCGUUUACAUUUUUCUUGAGCAUUUUCCCUUUUGCCAUUCUCAAAUGUAAUUACAUUUCAUUUUUCUCGCUUCGCAUCU-UUCGGUCGUUUCAUCUCUU --(((.((((((..((((((((((....((.(((..........))))).....))))))))..))..............((...))....-..)))))).)))....... ( -18.20, z-score = -3.00, R) >droYak2.chr3R 12155386 108 + 28832112 --GGACUGACCGUCGUUUACAUUUUUCUUGAGCAUUUUCCCUUUUGCCAUUUUCAAAUGUAAUUACAUUUCAUUUUUCUCGCUUCGCAUCU-UUCGGUCGUUCCAUCUCUU --(((.((((((..((((((((((....((.(((..........))))).....))))))))..))..............((...))....-..)))))).)))....... ( -21.10, z-score = -4.22, R) >droEre2.scaffold_4770 3869221 108 + 17746568 --AGACUGACCGUCGUUUACAUUUUUCUUGAGCAGUUUCCCUUUUGCCAUUUUCAAAUGUAAUUACAUUUCAUUUUUCUCGCUUCGCGUCU-UUCGGUCGUUCUAUCUCUU --(((.((((((..((((((((((....((.((((........)))))).....))))))))..)).............(((...)))...-..)))))).)))....... ( -21.00, z-score = -3.77, R) >droAna3.scaffold_12911 2410596 100 - 5364042 GGGGACUG---GACUGCCACAUUUUCUUUUGCAUUUUCCUCCUUUGCCGUUUUCAAAUGUAAUUACAUUUCAUUUUUCUCGCUUCGCUCCUCUUCCAACCUUC-------- (((((.((---((..((.............(((...........))).......((((((....))))))..........)))))).)))))...........-------- ( -12.40, z-score = -0.50, R) >consensus __GGACUGACCGUCGUUUACAUUUUUCUUGAGCAUUUUCCCUUUUGCCAUUUUCAAAUGUAAUUACAUUUCAUUUUUCUCGCUUCGCAUCU_UUCGGUCGUUCCAUCUCUU ..(((.((((((..(((((.........))))).....................((((((....))))))........................)))))).)))....... (-10.76 = -10.70 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:53 2011