| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,135,469 – 7,135,563 |
| Length | 94 |
| Max. P | 0.738306 |
| Location | 7,135,469 – 7,135,563 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.82 |
| Shannon entropy | 0.25968 |
| G+C content | 0.46946 |
| Mean single sequence MFE | -34.08 |
| Consensus MFE | -24.73 |
| Energy contribution | -24.85 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738306 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7135469 94 + 23011544 ACGCUCCUGCUGUUGCUGCAUAAUUGAUAAAUGUUUACAAAUUAUUAUGUUGCACAUACAGCAGUGGCAGCAGCAACA------------------UGGA--GCCCACCCAGGC ..((((((((((((((..(((((((..(((....)))..))))))..(((((......))))))..)))))))))...------------------.)))--)).......... ( -32.40, z-score = -2.38, R) >droSim1.chr2L 6924935 112 + 22036055 CCGCUCCUGCUGUUGCUGCAUAAUUGAUAAAUGUUUACAAAUUAUUAUGUUGCACAUACAGCAGUGGCAGCAGCACCAGCAGCAGCCACAUCGCGAUGGA--GCCCACCCAGGC ..((((((((((((((.(((((((.(((...((....)).)))))))))).)))...))))))(((((.((.((....)).)).)))))........)))--)).......... ( -37.70, z-score = -1.80, R) >droYak2.chr2L 16553542 108 - 22324452 CCGCUCCUGCUGUUGCUGCAUAAUUGAUAAAUGUUUACAAAUUAUUAUGUUGCACAUACAGCAGUGGCAGCAGCAGCAGUACCA------UCGCCAUGGAAUGGCCACCCAGGC ..(((.(((((((((((((...((((....((((..(((........)))...))))....)))).))))))))))))).....------..(((((...)))))......))) ( -37.20, z-score = -1.86, R) >droPer1.super_8 833005 100 - 3966273 -UGCUGUUGCUGUUGCUGCAUAAUUGAUAAAUGUUUACAAAUUAUUAUGUUGCACAUACAGCAGUGGCAACAACAACAGGAACC-----------AUCGA--GGCCACCCAGGC -..((((((.((((((..(((((((..(((....)))..))))))..(((((......))))))..)))))).)))))).....-----------.....--.(((.....))) ( -29.00, z-score = -1.30, R) >consensus CCGCUCCUGCUGUUGCUGCAUAAUUGAUAAAUGUUUACAAAUUAUUAUGUUGCACAUACAGCAGUGGCAGCAGCAACAG_A_CA___________AUGGA__GCCCACCCAGGC ..(((.(((((((..((((((((((..(((....)))..))))))((((.....))))..))))..))))))).......................(((.....)))....))) (-24.73 = -24.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:58 2011