| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,720,608 – 7,720,707 |
| Length | 99 |
| Max. P | 0.618243 |
| Location | 7,720,608 – 7,720,707 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.43 |
| Shannon entropy | 0.52594 |
| G+C content | 0.46126 |
| Mean single sequence MFE | -30.12 |
| Consensus MFE | -15.74 |
| Energy contribution | -15.11 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7720608 99 - 27905053 GAG---UUUGAUCUAGCAGUGGCUGGAUUGGUGGCGCUGGUCAUCGUCCUUUUCGUUGGCGUUAUUAGCUUUAUUGUCCUGUGCUGCUGCCUAAAGCAUUGG------------------ ..(---(((......((((..((.((((.(((((.((((((...((.((........))))..)))))).)))))))))...))..))))...)))).....------------------ ( -29.60, z-score = -0.65, R) >droSim1.chr3R 13841487 99 + 27517382 GAG---UUUGAUCUAGCAGUGGCUGGAUUGGUGGCGCUGGUCAUCGUCCUUUUUGUGGGCGUUAUUAGUUUUAUUGUCCUGUGCUGCUGCCUAAAGCAUUGG------------------ ..(---(((......((((..((.((((.(((((.((((((...(((((.......)))))..)))))).)))))))))...))..))))...)))).....------------------ ( -32.20, z-score = -1.76, R) >droSec1.super_0 6871408 99 + 21120651 GAG---UUUGAUCUAGCAGUGGCUGGAUUGGUGGCGCUGGUCAUCGUCCUUUUUGUUGGCGUUAUUAGUUUUAUUGUCCUAUGCUGCUGCCUAAAGCAUUGG------------------ ..(---(((......((((..((.(((((((((((((..(.((..........)))..)))))))))........))))...))..))))...)))).....------------------ ( -29.50, z-score = -1.27, R) >droWil1.scaffold_181130 929442 99 + 16660200 GAA---UUUGAUUUAGCUGUUGCCGGACUUGUAGCCCUGGUCAUUGUGCUCUUUGUGGGUGUCAUUAGCUUCAUAGUGCUCUGUUGUUGUCUCAAGCACUGG------------------ ...---..(((...(((((..(((((..........)))))....(..(((.....)))..)...))))))))(((((((.((.........))))))))).------------------ ( -20.10, z-score = 1.51, R) >anoGam1.chr2R 42099503 117 - 62725911 GAG---UUUGAUCUGGCACUGGCGGCGUUGAUUGCACUGCUGAUUGUGCUGUUUGUUGGUGCGGUUAGUUUUAUUGUACUCUGCUGCUGCUUGAAGCACUGGUAAGUUGCCGUUGGUGAG ...---..........(((..((((((..((.((((..((((((((..(((.....)))..)))))))).....)))).))((((..(((.....)))..))))...))))))..))).. ( -39.00, z-score = -1.54, R) >apiMel3.Group7 3472588 102 + 9974240 GAACCUUUUGAUCCUGCAUUAGCUGCUUUAAUUGCCUUAUUGGUAGUUUUAUUAGUUGGUGCAGUUACAGUAACAGUAGUUUGUUGUUGUUUACGACAUUGG------------------ ...((...((.((((((((((((((.(..(((((((.....)))))))..).))))))))))))..((((((((((....))))))))))....))))..))------------------ ( -30.30, z-score = -3.31, R) >consensus GAG___UUUGAUCUAGCAGUGGCUGGAUUGGUGGCGCUGGUCAUCGUCCUUUUUGUUGGCGUUAUUAGUUUUAUUGUCCUCUGCUGCUGCCUAAAGCAUUGG__________________ ...............((((((((.((((((((((((((...................))))))))))))))...........)))))))).............................. (-15.74 = -15.11 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:51 2011