| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,713,293 – 7,713,345 |
| Length | 52 |
| Max. P | 0.670877 |
| Location | 7,713,293 – 7,713,345 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 84.60 |
| Shannon entropy | 0.27983 |
| G+C content | 0.47733 |
| Mean single sequence MFE | -13.64 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.04 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670877 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7713293 52 + 27905053 GAUCCAUCGAGGGU-AUAAAAUGUGGAAGCAAGGCUUUGAAUUCG----CGCCCUCU ........((((((-........(.(((((...))))).).....----.)))))). ( -13.34, z-score = -0.81, R) >droSim1.chr3R 13834154 52 - 27517382 GAUCCAUCGAGGGU-AUAAAAUGUUGAAGCAAGGCUUUGAAUUCG----CGCCCUCU ........((((((-........(..((((...))))..).....----.)))))). ( -14.54, z-score = -1.64, R) >droSec1.super_0 6864089 52 - 21120651 GAUCCAUCGAGGGU-AUAAAAUGUUGAAGCAAGGCUUUGAAUUCG----CGCCCUCU ........((((((-........(..((((...))))..).....----.)))))). ( -14.54, z-score = -1.64, R) >droYak2.chr3R 12124893 52 - 28832112 GAUCCAUCGAGGGU-AUAAAAUGUUGAAGCAGGGCUUUGAAUUCG----CGCCCUCU ........((((((-........(..((((...))))..).....----.)))))). ( -14.54, z-score = -1.16, R) >droEre2.scaffold_4770 3839008 52 - 17746568 GAUCAAUCGAGGGU-AUAAAAUGUUGAAGCAGGGCUUUGAAUUCG----CGUCCUCU ........(((((.-.(.((...(..((((...))))..).)).)----..))))). ( -10.50, z-score = -0.24, R) >droVir3.scaffold_13047 3765338 54 + 19223366 ---CCACCAAGCGCGACAAAGCGUUAAAGCAGGGCUUUGGAAUCUGUCUCGCUCUCU ---......((((.((((.(...(((((((...)))))))..).)))).)))).... ( -14.40, z-score = -0.71, R) >consensus GAUCCAUCGAGGGU_AUAAAAUGUUGAAGCAAGGCUUUGAAUUCG____CGCCCUCU ........((((((.........(((((((...)))))))..........)))))). (-12.10 = -12.04 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:50 2011