| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,712,994 – 7,713,048 |
| Length | 54 |
| Max. P | 0.698843 |
| Location | 7,712,994 – 7,713,048 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 90.06 |
| Shannon entropy | 0.15723 |
| G+C content | 0.56606 |
| Mean single sequence MFE | -15.15 |
| Consensus MFE | -12.54 |
| Energy contribution | -12.72 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7712994 54 - 27905053 CAGGCAGGGCAGUGAAUAGUCGGUGCACUCGGGUACAACGCUCAGUCUGGUUUU (((((...(((.(((....))).)))....((((.....)))).)))))..... ( -15.70, z-score = -1.57, R) >droSim1.chr3R 13833890 52 + 27517382 CAGGCAGGGCAGUGAAUAGUCGGGGCAGUCGGGUACAACGUU--GUCUGGUUUU (((((((.(..(((....(.(......).)...)))..).))--)))))..... ( -11.60, z-score = -1.09, R) >droSec1.super_0 6863814 52 + 21120651 CGGACAGGGCAGUGAAUAGUCGGGGCACUCGGGUACAACGCU--GUCUGGUUUU .((((.((((((((..((.(((((...))))).))...))))--)))).)))). ( -17.50, z-score = -2.38, R) >droEre2.scaffold_4770 3838776 54 + 17746568 CAGGCAGGGCAAUGAUUAGUCGGGGCACUCGGGCACAACGCUCAGUCUGGUUUU (((((...((..(((....)))..))....((((.....)))).)))))..... ( -15.80, z-score = -1.95, R) >consensus CAGGCAGGGCAGUGAAUAGUCGGGGCACUCGGGUACAACGCU__GUCUGGUUUU (((((.((((..((..((.((((.....)))).))))..)))).)))))..... (-12.54 = -12.72 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:49 2011