| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,700,898 – 7,700,992 |
| Length | 94 |
| Max. P | 0.799519 |
| Location | 7,700,898 – 7,700,992 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.46 |
| Shannon entropy | 0.62095 |
| G+C content | 0.41070 |
| Mean single sequence MFE | -22.62 |
| Consensus MFE | -10.43 |
| Energy contribution | -12.10 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7700898 94 + 27905053 AUCUGGCUAUUUUCUCCACCUACUUUUUGGUCUGGAAAAGUGUUUGGAUUUUGCGUUUUGUGCUGCAUUUUGUGGCAAGGAUGUACUUUGUGUA--------------------- (((..(.((((((.((((((........)))..))))))))).)..)))..((((((((.(((..(.....)..))))))))))).........--------------------- ( -23.20, z-score = -1.70, R) >droAna3.scaffold_12911 2354107 77 + 5364042 ACCCAGGUAGAUGAUUUCUCUUCUAUUUGGUUU-AAAAAGUAGUUCGUUUU-----UCGCGGGCGCAU-----AACAAAGAUUGAUUU--------------------------- ..(((((((((.((....)).)))))))))...-.....((.((((((...-----..))))))))..-----...............--------------------------- ( -16.50, z-score = -1.18, R) >droEre2.scaffold_4770 3826491 113 - 17746568 AUCUGGCUGUGUUCCCCACUUACCUUUUGGCCUGAGAAAGUAUUUGGAUUU-GCGUUCUCUGCUGCAUUUUGUGGCAAGGAUGUACUUU-UCUAGGGAAUCCUUUUUUGUGCGUA .((.(((((((.....))).........)))).))....((((..((((((-(((((((.(((..(.....)..)))))))))).(((.-...)))))))))......))))... ( -27.50, z-score = -0.48, R) >droYak2.chr3R 12112198 112 - 28832112 CUCUGGCUAUUUUCCCCACUUACCUUUUGGCCUGAAAAAGUAUUUGGAUAU-GCGUUCUCCGCCGCAUUUUGUGGCAAGGAUGUACUUU-UCUAGGAAAUCCUUUUU-GUGUGUA ....((....((((((((..(((.((((......)))).)))..)))...(-(((((((..(((((.....))))).))))))))....-....))))).)).....-....... ( -26.70, z-score = -1.18, R) >droSec1.super_0 6851668 82 - 21120651 -----------AUCUCCACCUACCUUUUGGUCUGGAAAAGUGUUUGGAUUU-GCGUUCUCUGCUGCAUUUUGUGGCAAGGAUGUACUUUGUGUA--------------------- -----------...((((...(((....))).))))..........((..(-(((((((.(((..(.....)..)))))))))))..)).....--------------------- ( -20.90, z-score = -1.47, R) >droSim1.chr3R 13821709 82 - 27517382 -----------AUCUCCACCUACCUUUUGGUCUGGAAAAGUGUUUGGAUUU-GCGUUCUGUGCUGCAUUUUGUGGCAAGGAUGUACUUUGUGUA--------------------- -----------...((((...(((....))).))))..........((..(-(((((((.(((..(.....)..)))))))))))..)).....--------------------- ( -20.90, z-score = -1.32, R) >consensus AUCUGGCUAU_UUCUCCACCUACCUUUUGGUCUGAAAAAGUAUUUGGAUUU_GCGUUCUCUGCUGCAUUUUGUGGCAAGGAUGUACUUU_UGUA_____________________ ...............(((..(((.((((......)))).)))..))).....(((((((.((((((.....)))))))))))))............................... (-10.43 = -12.10 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:47 2011