| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,697,781 – 7,697,877 |
| Length | 96 |
| Max. P | 0.777250 |
| Location | 7,697,781 – 7,697,877 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 71.73 |
| Shannon entropy | 0.50333 |
| G+C content | 0.50334 |
| Mean single sequence MFE | -24.24 |
| Consensus MFE | -14.56 |
| Energy contribution | -14.92 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7697781 96 - 27905053 GGCCGAAAUGUUUAUUUUAAUCCCCCC----------------------CCUUGGCCAAAUC--CACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ((((((.....................----------------------..)))))).....--....(((..((((((((((.(((((......)))))..)).))))).))).))).. ( -25.20, z-score = -1.98, R) >droSim1.chr3R 13818639 105 + 27517382 GGCCGAAAUGUUUAUUUUGAACCCCCUGCUUUCCCC-------------CCUUGGCCAAAUC--CACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ((((((..............................-------------..)))))).....--....(((..((((((((((.(((((......)))))..)).))))).))).))).. ( -24.85, z-score = -1.29, R) >droSec1.super_0 6848748 86 + 21120651 ------------------GGCCGAAAUGCUCCCCC--------------CCUUGGCCAAAUC--CACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ------------------((((((...........--------------..)))))).....--....(((..((((((((((.(((((......)))))..)).))))).))).))).. ( -25.82, z-score = -2.24, R) >droYak2.chr3R 12109064 113 + 28832112 GGCCGAAAUGUUUAUUUUGAUUCCCCUUUCCCCCUUC-------CUUUGCCCCUGGCAAAUCCACACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ((.((((((....))))))..................-------.((((((...)))))).)).....(((..((((((((((.(((((......)))))..)).))))).))).))).. ( -25.30, z-score = -1.17, R) >droEre2.scaffold_4770 3823427 118 + 17746568 GGCCGUAAUAUUUAUUUGGAUUCCCCUCCUCCCCUCCUCCACCACCUUUCCCCUGGCAAAUC--CACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ................((((((..((............................))..))))--))..(((..((((((((((.(((((......)))))..)).))))).))).))).. ( -23.99, z-score = -0.67, R) >droAna3.scaffold_12911 2351243 90 - 5364042 ----GAAAUGUAUAUUUUUGGGGAC------------------------UCUUCCGGAAAUC--CAGGCAUAAAUCAUGUCACAGACUGCACUGACAGCUGCGGCGCCAUCGAUGAUGAU ----...((((..((((((((((..------------------------..)))))))))).--...)))).......(((.(((.(((......)))))).)))..((((...)))).. ( -20.30, z-score = 0.34, R) >consensus GGCCGAAAUGUUUAUUUUGAUCCCCCU_CUCCCC_______________CCUUGGCCAAAUC__CACACAUAAAUCAUGGCCCAAACUGCACUGACAGUUGCGGCGCCAUCGAUGAUGAU ....................................................................(((..((((((((((.(((((......)))))..)).))))).))).))).. (-14.56 = -14.92 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:46 2011