| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,697,127 – 7,697,225 |
| Length | 98 |
| Max. P | 0.953305 |
| Location | 7,697,127 – 7,697,225 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.21 |
| Shannon entropy | 0.25062 |
| G+C content | 0.59829 |
| Mean single sequence MFE | -39.81 |
| Consensus MFE | -28.94 |
| Energy contribution | -31.58 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.953305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7697127 98 + 27905053 -CCAAC-CCCCCAGCCACCCUGCAUUCCGCCCACUGAAUGACAGUCAAAGCCGAAGAAGGAAAACAGGCGGUGCGGGAGGGUAAGCUGGGUGAGACG---GAG------ -((..(-.(((((((.(((((.(...(((((.((((.....)))).....((......))......)))))....).)))))..)))))).).)..)---)..------ ( -37.10, z-score = -1.94, R) >droSim1.chr3R 13817988 97 - 27517382 -CCAAC-CGCCCAGCCACCCUGCAUUCCGCCCACUGAAUGACAGUCAAAGCCGAAGAAGGAAAACAGGUGGUGCGGGGUAU-AAGCUGGGUGAGACG---GAG------ -((..(-((((((((.((((((((..(((((.((((.....)))).....((......))......)))))))))))))..-..)))))))).)..)---)..------ ( -42.00, z-score = -3.99, R) >droSec1.super_0 6848129 97 - 21120651 -CCAAC-CGCCCAGCCACCCUGCAUUCCGCCCACUGAAUGACAGUCAAAGCCAAAGAAGGAAAACAGGUGGUGCGGGGUGG-AAGCUGGGUGAGACG---GAG------ -((..(-(((((((((((((((((..(((((.((((.....)))).....((......))......)))))))))))))).-..)))))))).)..)---)..------ ( -44.20, z-score = -3.95, R) >droYak2.chr3R 12108379 109 - 28832112 UCCACCACCCCCACCCAUCCAACAUUCCGCCCACUGAAUGACAGUCAAAGCCGAAGAAGGAACACAGGUGGUGCGGGGGGGUAGGCGGGGUAAGCUGCCUGAGACGGAG ((((((.(((((.((((((...(((((........)))))..........((......))......))))).).))))))))((((((......)))))).....))). ( -40.10, z-score = -0.50, R) >droEre2.scaffold_4770 3822753 95 - 17746568 -UCCAC-CACCCAACCACCCAGCAUUCCGCCCACUGAAUGACAGUCAAAGCCGAAGAAGGAAAACAGGUGGUGGGGGGU---AAGCUGGGUGAGACG---GAG------ -.....-...((..(((((((((...((.(((((((..((..........((......))....))..))))))).)).---..)))))))).)..)---)..------ ( -35.64, z-score = -1.96, R) >consensus _CCAAC_CCCCCAGCCACCCUGCAUUCCGCCCACUGAAUGACAGUCAAAGCCGAAGAAGGAAAACAGGUGGUGCGGGGUGG_AAGCUGGGUGAGACG___GAG______ .......(((((((((((((((((..(((((.((((.....)))).....((......))......))))))))))))))....))))))))................. (-28.94 = -31.58 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:45 2011