| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,129,843 – 7,129,897 |
| Length | 54 |
| Max. P | 0.967225 |
| Location | 7,129,843 – 7,129,897 |
|---|---|
| Length | 54 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 58.65 |
| Shannon entropy | 0.73319 |
| G+C content | 0.39874 |
| Mean single sequence MFE | -9.24 |
| Consensus MFE | -4.07 |
| Energy contribution | -5.35 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7129843 54 - 23011544 --------GCCAAAG--------AAAGAGACAGAAACGCAGUGUCCAAAGGUAUUUGGAUAUAAACAAUU --------.......--------.................(((((((((....)))))))))........ ( -9.40, z-score = -2.41, R) >dp4.chr4_group2 756756 63 - 1235136 GAAUGGGGAGCCCAAUUAA----GCAGUGGAGGGAGGGGGAUAAUCAAGGGAAAAACUUCACGAAUA--- ...((((...)))).....----...((((((........................)))))).....--- ( -9.66, z-score = -0.10, R) >droEre2.scaffold_4929 16045101 64 - 26641161 --GUAUAAGACACAAGGAA----AGGGGGAGAGAAACGCAGUGUCCCAAAGCAUUUGGACUAAAACAGUU --..........((((...----...((((.(.........).))))......))))((((.....)))) ( -7.60, z-score = 0.61, R) >droYak2.chr2L 16547875 68 + 22324452 --GUAUGAGCCACAAAGAAUAAGACAGAGAGAGAAGUGCAGUGUCCAAAAGAAUUUGGAUAUAAACAGUU --.................................((...(((((((((....)))))))))..)).... ( -9.60, z-score = -2.09, R) >droSec1.super_3 2653444 54 - 7220098 --------GCCAAAG--------AAAGAGACUGAGACGCAGUGUCCAAAAGUAUUUGGAUAUAAACAAUU --------.(((((.--------...((.((((.....)))).))........)))))............ ( -9.10, z-score = -2.05, R) >droSim1.chr2L 6919398 54 - 22036055 --------GCCACAG--------AAAGAGACUGAAACGCAGUGUCCAAAAGUAUUUGGAUAUAAACAAUU --------((..(((--------.......)))....)).(((((((((....)))))))))........ ( -10.10, z-score = -2.39, R) >consensus ________GCCACAA________AAAGAGACAGAAACGCAGUGUCCAAAAGUAUUUGGAUAUAAACAAUU ........................................(((((((((....)))))))))........ ( -4.07 = -5.35 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:22:57 2011