| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,673,767 – 7,673,879 |
| Length | 112 |
| Max. P | 0.895850 |
| Location | 7,673,767 – 7,673,879 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.33 |
| Shannon entropy | 0.29168 |
| G+C content | 0.42693 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -21.26 |
| Energy contribution | -21.86 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.895850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7673767 112 - 27905053 AAAUCUUAAGUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCGCAGCGGCAUCUUUUAUG .........((((.(((......(((.....)))(((((....)))))))).)---)))....(((((..(((((((((((....)))))))))))..))).))........... ( -31.60, z-score = -2.15, R) >droEre2.scaffold_4770 3799414 108 + 17746568 AGAUGUUAAAU-CCACUCGUAAUGACCAACAGUUUUCCAAUUUUAGAGAGCAG---GGCACCACCCU---GAUGCUCAUGCAUAUGUAUAGGCAUCGACAGCGGCAUCUUUUAUG (((((((....-...................((((((........))))))((---((.....))))---(((((..((((....))))..)))))......)))))))...... ( -27.40, z-score = -1.67, R) >droYak2.chr3R 12083245 97 + 28832112 -------------AAGUUCUAA--AUCCCAAGUUGUCUAAUUUUUGAGAACAGAAAGGCACCACCCU---GAUGCUCAUGCAUAUGUAUAGGCAUCGACGGCGGCAUCUUUUAUG -------------.........--.......(((.((........)).))).((((((..((.((.(---(((((..((((....))))..))))))..)).))..))))))... ( -25.70, z-score = -1.94, R) >droSec1.super_0 6824793 112 + 21120651 AAAUCUUAAAUCCCACUCGUAAUGACCAAGAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGACGAUGCUCAUGCAUAUGUAUGGGCAUCCGCAGCGGCAUCUUUUAUG ...........(((((((...........))))((((((....))))))...)---)).....(((((..(((((((((((....)))))))))))..))).))........... ( -32.70, z-score = -2.53, R) >droSim1.chr3R 13794396 112 + 27517382 AAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG---GGCACCACCCUGAUGAUGCUCAUGCAUAUGUAUGGGCAUCCACAGCGGCAUCUUUUAUG ...........................(((((.((((.............(((---((.....)))))..(((((((((((....)))))))))))......)))).)))))... ( -29.30, z-score = -1.95, R) >consensus AAAUCUUAAAUCCCACUCGUAAUGACCAAAAGUUGUCUAAUUUUAGAUAGUAG___GGCACCACCCUGA_GAUGCUCAUGCAUAUGUAUGGGCAUCCACAGCGGCAUCUUUUAUG ...............................((((((((....))))))))............(((((..(((((((((((....)))))))))))..))).))........... (-21.26 = -21.86 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:43 2011