| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,655,894 – 7,655,948 |
| Length | 54 |
| Max. P | 0.962036 |
| Location | 7,655,894 – 7,655,948 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 89.86 |
| Shannon entropy | 0.17339 |
| G+C content | 0.46940 |
| Mean single sequence MFE | -13.46 |
| Consensus MFE | -9.92 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.962036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7655894 54 + 27905053 CAUUAGGUAAGUGGGUUUAAUAGCGGGAGAGCGGAGAACACCUCGUAUAAUGGC--- (((((.....(.((((((....((......))...)))).)).)...)))))..--- ( -10.30, z-score = -1.05, R) >droSim1.chr3R 13781547 54 - 27517382 CAUUAGGUGAGUGGGUUCAAUAGCGGGAAAGCGGAGAACACCUCGUAUAAUGGC--- (((((..((((((..(((....((......)).)))..)).))))..)))))..--- ( -15.40, z-score = -2.95, R) >droSec1.super_0 6811994 57 - 21120651 CAUUAGGUGAGUGGGUUCAAUAGCGGGAAAGCGGAGAACACAUUUUAUAAUAAUGGC (((((...(((((.((((....((......))...)))).))))).....))))).. ( -12.90, z-score = -3.98, R) >droYak2.chr3R 12070328 54 - 28832112 CAUUAGGUGAGUGGGUUCAAUAGCGGGAAAGCGGAGAACACCUUGUAUAAUGGC--- (((((.(..((((..(((....((......)).)))..)).))..).)))))..--- ( -13.30, z-score = -2.29, R) >droEre2.scaffold_4770 3786039 54 - 17746568 CAUUAGGUGAGUGGGUUCAAUAGCGGGAAAGCGGAGAACAACUCUUAUAAUGGC--- (((((...((((..((((....((......))...)))).))))...)))))..--- ( -15.40, z-score = -3.93, R) >consensus CAUUAGGUGAGUGGGUUCAAUAGCGGGAAAGCGGAGAACACCUCGUAUAAUGGC___ (((((...(((((..(((....((......)).)))..)).)))...)))))..... ( -9.92 = -10.20 + 0.28)
| Location | 7,655,894 – 7,655,948 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 89.86 |
| Shannon entropy | 0.17339 |
| G+C content | 0.46940 |
| Mean single sequence MFE | -7.24 |
| Consensus MFE | -5.14 |
| Energy contribution | -5.70 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7655894 54 - 27905053 ---GCCAUUAUACGAGGUGUUCUCCGCUCUCCCGCUAUUAAACCCACUUACCUAAUG ---..(((((....(((((......((......)).........)))))...))))) ( -4.66, z-score = -0.40, R) >droSim1.chr3R 13781547 54 + 27517382 ---GCCAUUAUACGAGGUGUUCUCCGCUUUCCCGCUAUUGAACCCACUCACCUAAUG ---..(((((...((((.((((...((......))....)))).).)))...))))) ( -9.40, z-score = -2.38, R) >droSec1.super_0 6811994 57 + 21120651 GCCAUUAUUAUAAAAUGUGUUCUCCGCUUUCCCGCUAUUGAACCCACUCACCUAAUG ..(((((........((.((((...((......))....)))).))......))))) ( -4.94, z-score = -2.09, R) >droYak2.chr3R 12070328 54 + 28832112 ---GCCAUUAUACAAGGUGUUCUCCGCUUUCCCGCUAUUGAACCCACUCACCUAAUG ---............((.((((...((......))....))))))............ ( -7.60, z-score = -1.95, R) >droEre2.scaffold_4770 3786039 54 + 17746568 ---GCCAUUAUAAGAGUUGUUCUCCGCUUUCCCGCUAUUGAACCCACUCACCUAAUG ---..(((((...((((.((((...((......))....))))..))))...))))) ( -9.60, z-score = -3.72, R) >consensus ___GCCAUUAUACGAGGUGUUCUCCGCUUUCCCGCUAUUGAACCCACUCACCUAAUG .....(((((...(((..((((...((......))....))))...)))...))))) ( -5.14 = -5.70 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:41 2011