| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,633,533 – 7,633,615 |
| Length | 82 |
| Max. P | 0.999228 |
| Location | 7,633,533 – 7,633,615 |
|---|---|
| Length | 82 |
| Sequences | 7 |
| Columns | 89 |
| Reading direction | forward |
| Mean pairwise identity | 63.93 |
| Shannon entropy | 0.68498 |
| G+C content | 0.39213 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -10.61 |
| Energy contribution | -12.66 |
| Covariance contribution | 2.05 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.72 |
| SVM RNA-class probability | 0.999228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7633533 82 + 27905053 GAGCUGUUAGAUAUCAGCGCACUGCUUGACCCAUUAAGCAGUGCGGCAUUUUGUGUCUGUUAAUUUAUAAGUAGUUCUCAUA------- (((((((((...((.((((((((((((((....)))))))))))(((((...))))).))).))...))).)))))).....------- ( -27.50, z-score = -3.53, R) >droEre2.scaffold_4770 3763455 70 - 17746568 UAGCUGUUAGAUAUCAGCGCACUGCUUGACCCAUUAAGCAGUG------------UCUGUUAAUUUGAAAAUAGUUCACAUG------- .(((((((((((..(((.(((((((((((....))))))))))------------))))...)))))...))))))......------- ( -21.00, z-score = -3.27, R) >droYak2.chr3R 12047500 70 - 28832112 UAGCUGUUAGAUAUCGGCGCACUGCUUGACCCAUUAAGCAGUG------------UCUGUUAAUUUAAAAAUAGUUCAGAUG------- .(((((((((((..(((.(((((((((((....))))))))))------------))))...)))))...))))))......------- ( -20.60, z-score = -3.18, R) >droSec1.super_0 6789511 82 - 21120651 GAGCUGUUAGAUAUCAGCGCACUGCUUGACCCAUUAAGCAGUGCGGUCUUAAGUGUCUGUUAAUUUAUAAAUAGUUCUCAUA------- ((((((((((((((.(.((((((((((((....)))))))))))).).....)))))))...........))))))).....------- ( -27.60, z-score = -4.08, R) >droSim1.chr3R 13759127 80 - 27517382 GAACUGUUAGAUAUCAGCGCACUGCUUGACCCAUUAAGCAGUGCAGCAUUAUGUGUCUGUUAAUUUAUAAAUAGUUCUCA--------- ((((((((((((((..(((((((((((((....))))))))))).)).....)))))))...........)))))))...--------- ( -27.20, z-score = -4.36, R) >droPer1.super_6 1200748 82 + 6141320 UCACUGUUAGAUAUUAGAGCACUGCUUGAACUUGAGGUUUCUGUUAAGGUAAACAGCGGUUGGUGUACACGCUAUAAGUAUU------- .........((((((..(((((((((....(((((.(....).)))))......))))))..((....)))))...))))))------- ( -13.70, z-score = 1.52, R) >dp4.chr2 5068266 77 - 30794189 UCACUGUUAGAUAUUAGAGCACUGCUUG------------CUGUUAAGGUAAACAGCGGUUGGUGUACACGCUAUAAGUGGAUCAUUUC (((((..(((........(((((..(((------------(((((......))))))))..))))).....)))..)))))........ ( -20.02, z-score = -1.03, R) >consensus UAGCUGUUAGAUAUCAGCGCACUGCUUGACCCAUUAAGCAGUGC_G__UUAAGUGUCUGUUAAUUUAUAAAUAGUUCUCAUA_______ ((((((((((((..(((((((((((((((....))))))))))))...........)))...)))))...)))))))............ (-10.61 = -12.66 + 2.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:38 2011