| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,626,549 – 7,626,642 |
| Length | 93 |
| Max. P | 0.980252 |
| Location | 7,626,549 – 7,626,642 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 59.21 |
| Shannon entropy | 0.80604 |
| G+C content | 0.57113 |
| Mean single sequence MFE | -28.97 |
| Consensus MFE | -20.45 |
| Energy contribution | -19.69 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.41 |
| Mean z-score | -0.40 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.04 |
| SVM RNA-class probability | 0.980252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7626549 93 - 27905053 GCAGCCUGUGCUGUCGGUGUGGGCGCCUGUUUUGCCGCUCCAGUCGGUGGUAAGUACAUACGAGA--GUAUACCUUACCAUUCUCGAGUUUCUUG------------------- ((.(((((..(.....)..)))))))..........((((.((...((((((((...((((....--))))..)))))))).)).))))......------------------- ( -29.70, z-score = -1.08, R) >droSim1.chr3R 13752318 95 + 27517382 GCAGCCUGUGCCGUCGGUGUGGGCGCCUGUUUUGCCGCUCCAGUGGGUGGUAAGUACACACGAGACUAUAUACCUCACCAUUCUCGAGAUUCUUG------------------- ((.(((((..((...))..))))))).(((((((((((((....)))))))))).)))..(((((................))))).........------------------- ( -29.39, z-score = -0.25, R) >droYak2.chr3R 12041019 80 + 28832112 GCCGCCUGUGCCGUCGGUGUGGGCGCCUGUUUUGCCGCUCCAGUCGGUGGUAAGUGCACAU-ACUCCAUAUAUUUUCCUUG--------------------------------- ((((((((..((...))..)))))).....(((((((((......))))))))).))....-...................--------------------------------- ( -23.30, z-score = -0.30, R) >droEre2.scaffold_4770 3757140 89 + 17746568 GCAGCCUGUGCCGUCGGUGUGGGCGCCUGUUUUGCCGCUCCAGUCGGUGGUAAGUACACCU-ACGCCAUCGUUCUUGGGUGUCUUCUGAU------------------------ (((.((.....((..((((((((....((((((((((((......))))))))).))))))-)))))..)).....)).)))........------------------------ ( -31.60, z-score = -0.84, R) >droAna3.scaffold_13340 14107520 95 - 23697760 GCAGCCUGUGCAGUGGGCGUGGGCGCCUGUUUUGCCGCCCCAGUCGGUGGUGAGUAUAUAU--CACUAUAUAUAUAAAUUCUAUUCUGUCAUCUAUA----------------- ((.(((..(((.....)))..))))).....(..(((((......)))))..)((((((((--....))))))))......................----------------- ( -27.10, z-score = -0.23, R) >dp4.chr2 5062698 78 + 30794189 GCUGCCUGCGCCGUAGGCGUGGGUGCAUGCUUUGCCGCGCCCGUUGGCGGUGAGUACCAACCAUCCUCUCCCUGUGAA------------------------------------ ((.(((..((((...))))..))))).(((.(..((((........))))..))))......................------------------------------------ ( -27.40, z-score = 0.20, R) >droPer1.super_6 1195228 78 - 6141320 GCUGCCUGCGCCGUAGGCGUGGGUGCAUGCUUUGCCGCGCCCGUUGGCGGUGAGUACCAACCAUCCUCUCCCUGUGAA------------------------------------ ((.(((..((((...))))..))))).(((.(..((((........))))..))))......................------------------------------------ ( -27.40, z-score = 0.20, R) >droWil1.scaffold_181089 6621695 114 - 12369635 GCUGCCUGUGCCUUGGGUCUGGGUGCCUGUUUUGCUGCCCCAAUUGGAGGUUAGUAUGAAAAAAAGUUCUCCCUUGACCAUACCUGGCCACGCUCUUAACUGUAACUAUCAACA ...((.((.(((...((((.(((.(.((.((((((((((((....)).)).))))).)))....))..).)))..))))......))))).))..................... ( -27.30, z-score = 0.49, R) >droVir3.scaffold_12855 4551765 95 + 10161210 GCGGCCUGUGCCGUCGGUGUGGGCGCCUGUUUUGCCGCGCCCGUUGGUGGUGAGUACAGGAGAGAUCGAUUAGAUC-CUCA--UUGAUUAGCUGAGUA---------------- .(((((((((((..((.(..((((((..........))))))...).))..).))))))(((.((((.....))))-))).--.......))))....---------------- ( -35.20, z-score = -1.23, R) >droMoj3.scaffold_6540 28217832 73 + 34148556 GCUGCCUGUGCCGUCGGCGUGGGCGCGUGCUUUGCUGCGCCCGUAGGUGGUGAGUAC---UAAAGUCCACUUAGUA-------------------------------------- ((..((((.(((...)))..(((((((.((...))))))))).))))..))...(((---(((.......))))))-------------------------------------- ( -28.90, z-score = -0.61, R) >droGri2.scaffold_14906 8390030 93 - 14172833 GCUGCCUGCGCUGUUGGCGUCGGCGCCUGUUUUGCGGCGCCCGUUGGUGGUGAGUAC---AUAGAUCCAUUUGAUCGAUCAAUUUGAUUUGCUGAG------------------ ..(((...(((..(..(((..((((((........)))))))))..)..))).)))(---(((((((...((((....))))...)))))).))..------------------ ( -31.40, z-score = -0.71, R) >consensus GCUGCCUGUGCCGUCGGUGUGGGCGCCUGUUUUGCCGCGCCAGUUGGUGGUGAGUACAAAC_AGACCAUAUAUAUCACU____UUG____________________________ ((.(((..((((...))))..)))))....((((((((........))))))))............................................................ (-20.45 = -19.69 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:37 2011