| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,607,677 – 7,607,779 |
| Length | 102 |
| Max. P | 0.751822 |
| Location | 7,607,677 – 7,607,779 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 65.47 |
| Shannon entropy | 0.75047 |
| G+C content | 0.41945 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -10.67 |
| Energy contribution | -10.43 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.86 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751822 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 7607677 102 - 27905053 GCAUGGAAAUGCAACGUUUCCUGCGGUUGCUAGAGCAGCUUUGGCAGUCUAAGAAUGUAUGUUUCUCGUU-GACUACUAAACCUUUCCUUAGCAAUAACGAAA------ (((.(((((((...)))))))))).((((((((((.((.(((((.((((..((((.......))))....-)))).))))).)))))..))))))).......------ ( -28.20, z-score = -1.82, R) >droSim1.chr3R 13733185 102 + 27517382 GCAUGGAAAUGCAACGUUUCCUGCGGUUGCUAGAGCAGCUUUGGCAGUCUAAGAAUGUAUGUUUCUCGUU-GACUACUAAGCCUUUCCUCAGCAAUAACAAAA------ (((.(((((((...)))))))))).((((((.(((.((.(((((.((((..((((.......))))....-)))).))))).))...))))))))).......------ ( -28.80, z-score = -1.60, R) >droSec1.super_0 6762465 102 + 21120651 GCAUGGAAAUGCAACGUUUCCUGCGGUUGCUAGAGCAGCUUUGGCAAUCUAAGAAUGUAUGUUUCUCGUU-GACUACUAAGCCUUUCCUCAGCAAUAACGAAA------ ((((....))))..((((...((((((((((((((...))))))))))).......(((.(((.......-))))))..............)))..))))...------ ( -26.10, z-score = -0.88, R) >droYak2.chr3R 12022010 102 + 28832112 GCAUGGAAAUGCAACGUUUCCUGCGGUUGCUAGAGCAACUUUGGCAGUCUAAGAAUGUAUGUUUCUCGUU-GAUUAUUAAGCCUUAAUUCCGAAAUAACCAAA------ (((.(((((((...))))))))))(..((((((((...))))))))..)......((..((((((.....-(((((........)))))..))))))..))..------ ( -24.10, z-score = -1.24, R) >droEre2.scaffold_4770 3738196 102 + 17746568 GCAUGGAAAUGCAACGUUUUCUGCGGUUGCUAGAGCAGCUUUGGCAGUCUAAGAAUGUAUGUUCCUCGUU-GCUUAUUAAGCCUUUACUCCGAAAUAACGAAU------ ((((....))))(((((.((((..(..((((((((...))))))))..)..))))...)))))..(((((-(.((....((......))...)).))))))..------ ( -24.40, z-score = -0.32, R) >dp4.chr2 5042092 107 + 30794189 GCAUGGAAAUGCAACGAUUUUUGCGAUUACUGGAACAGCUUUGGCAGGCAAAGAAUGUAUGUCACACAAG-GACUAAUAGCC-UGAUUCUUUUACUGAUUGCAUCAUUU ((((....)))).........((((((((.(((((......(((((.(((.....))).)))))....((-(........))-).....))))).))))))))...... ( -22.60, z-score = -0.31, R) >droPer1.super_6 1174572 107 - 6141320 GCAUGGAAAUGCAGCGAUUUUUGCGAUUACUGGAACAGCUUUGGCAGGCAAAGAAUGUAUGUCACACAAG-GACUAAUAGCC-UGAUUCUUUUACCGAUUGCAUCAUUU ((((....)))).((((((..(((.(...(((...)))...).)))((.(((((((...((.....))((-(........))-).)))))))..))))))))....... ( -21.60, z-score = 0.56, R) >droWil1.scaffold_181130 3256287 90 - 16660200 GCAUGGAAAUGCAACGUUUCUUACGAUUGCUCGAGCAGCUCUGGCAAGCCAAGAAUGUACGUCCACA-------AAAUACCCAAAAAAAGAAUAAUG------------ ((((....)))).(((((((((....(((((.(((...))).)))))...)))))...)))).....-------.......................------------ ( -17.60, z-score = -0.88, R) >droVir3.scaffold_12855 7706507 99 - 10161210 GCAUGGAAAUGCAGCGCUUUUUGCGGCUGCUCGAGCAGCUUUGGCAGUCCAAAAAUGUGCGUUCAUUUUG----UAAUAACUGUAAAAAAUGUAUUAUUAAUA------ ((((....)))).((((((((((.(((((((.(((...))).))))))))))))).))))...((((((.----............))))))...........------ ( -29.22, z-score = -1.93, R) >droGri2.scaffold_15074 2563424 102 + 7742996 GCAUGGAAAUGCAGCGAUUUCUACGGCUGCUCGAGCAACUCUGGCAGGCCAAAAAUGUACGUUAGAUUUGCCAUUAAUAA-UAUUUGUAUUGUAUUAUUUAUC------ ((((....)))).((((..(((..(((((((.(((...))).)))).)))...(((....)))))).))))....(((((-(((.......))))))))....------ ( -23.70, z-score = -0.67, R) >anoGam1.chr2R 50726890 105 + 62725911 GCGCAGAGCAGGAACGUUUUCUGUCCAUGCUAGAAUCGAUCUGGCACACCAAGAAGGUAGGGUGACGCACUAACUUCGCAUUGCUUCCUUUGCGCAGCCACUCAA---- ((((((..(((((.....)))))..).(((((((.....)))))))....(((.((((((.((((.(......).)))).)))))).))))))))..........---- ( -30.60, z-score = -0.36, R) >consensus GCAUGGAAAUGCAACGUUUUCUGCGGUUGCUAGAGCAGCUUUGGCAGUCUAAGAAUGUAUGUUUCUCGUU_GACUAAUAACCCUUUACUUUGUAAUAACAAAA______ ((((....)))).(((.(((......((((((((.....)))))))).....))))))................................................... (-10.67 = -10.43 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:36 2011