| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,600,792 – 7,600,902 |
| Length | 110 |
| Max. P | 0.624052 |
| Location | 7,600,792 – 7,600,902 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.95 |
| Shannon entropy | 0.34894 |
| G+C content | 0.34275 |
| Mean single sequence MFE | -23.31 |
| Consensus MFE | -15.98 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7600792 110 + 27905053 UAAUUUUAAUAAGUUAG-UACGCAGUCUGCCUUCGAGUUGAUAU---------UCAUUUAAAUCGCUUCUUCUUAAUUAUGAGCUGCUUUGGAUUUUCCAACAUGUGAACUCUGAGCAAA ((((((....)))))).-.........(((.((.(((((.((((---------...........((...(((........)))..)).((((.....)))).)))).))))).))))).. ( -16.80, z-score = 0.74, R) >droEre2.scaffold_4770 3731074 119 - 17746568 CAAUUUUAUUUACUUGG-UGCUCAUUCUGCCUUCAAGUUGAUAUGUUUCCAUUUCAUUUGUAUUGCUUCUUUUUAAUUAUGAGCUGCUUCGGGGUUUCCAACAUAUGAACUCUGAGCAAA .................-.((((((...((...(((((.((.(((....))).)))))))....))............))))))((((.((((((((.........)))))))))))).. ( -22.96, z-score = -0.92, R) >droYak2.chr3R 12014842 120 - 28832112 UAAUUUUAUGCUCAUAAAUGCUCAUUCUGCCUUCGAGUUGAUAUGUUUUCAAUUCAUUUGCAUUGCUUCUUCUUAAUAAUGAGCUGCUUUGGGAUUUCCAACAUAUGAACUCGGAGCAAA ........(((((......((.......))...((((((.(((((((...(((((....(((..((((.((......)).)))))))....)))))...))))))).))))))))))).. ( -32.20, z-score = -3.38, R) >droSec1.super_0 6755577 101 - 21120651 CAAUUUUAUUAAUU----------GUCCGCCUUCGAGUUAAUAU---------UCAUUUAAAUCGCUUAUUCUUAAUUAUGAGCUGCUUUGGAUUUCCCAACAUGUGAACUCGGAGCAAA (((((.....))))----------)...((.((((((((.((((---------...........((((((........))))))....((((.....)))).)))).))))))))))... ( -22.40, z-score = -2.63, R) >droSim1.chr3R 13722252 110 - 27517382 CAAUUUUAUUAAGUUAG-UACUCAGUCUGCCUUCGAGUUGAUAU---------UCAUUUAAAUCGCAUCUUCUUAAUUAUGAGCUGCUUUGGACUUUCCAACAUGUGAACUCGGAGCAAA .................-.........(((.((((((((.((((---------...........(((.((.(........))).))).((((.....)))).)))).))))))))))).. ( -22.20, z-score = -1.01, R) >consensus CAAUUUUAUUAACUUAG_UACUCAGUCUGCCUUCGAGUUGAUAU_________UCAUUUAAAUCGCUUCUUCUUAAUUAUGAGCUGCUUUGGAUUUUCCAACAUGUGAACUCGGAGCAAA ............................((.((((((((.((((....................((...(((........)))..)).((((.....)))).)))).))))))))))... (-15.98 = -16.38 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:35 2011