| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,599,747 – 7,599,860 |
| Length | 113 |
| Max. P | 0.868742 |
| Location | 7,599,747 – 7,599,860 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 59.44 |
| Shannon entropy | 0.73091 |
| G+C content | 0.34475 |
| Mean single sequence MFE | -20.26 |
| Consensus MFE | -6.20 |
| Energy contribution | -7.12 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7599747 113 + 27905053 GAAAAUAGAUGGGUGUGAGAGGCUUACACUUAAAAAGAGAGGAC--GUAAUGAGUAGCCUAUUUAAGUUUAUGCGAAUAAUAAGAUAUUACAAAAAAUAGUUAUAUAGGGGCAAU .........((((((((((...))))))))))............--..........((((.......(((((.......)))))((((.((........)).))))..))))... ( -16.40, z-score = -0.71, R) >droEre2.scaffold_4770 3730030 93 - 17746568 GAAAAUAGAUGGGUGUGAGAGGCUUACACUCAGAAGGAGACAAU--AUACUGAGUAGGCUAUUUAAGUGUAGUUGAAUAAUCAGAA---AGAGAAAAC----------------- .........((((((((((...))))))))))...(....)...--...((((...((((((......))))))......))))..---.........----------------- ( -21.50, z-score = -3.60, R) >droSec1.super_0 6754575 109 - 21120651 GAAAAUAGAUGGGUGUGAGAGGCUUACACUUAAAAAGAGAGAAUCAGUACGUUCUAGCCUAUUUAAGUUUAUUUGAUAGAUGG------ACAAAAAAUAUUUAUAUAGGGAAAAU ..((((((.((((((((((...))))))))))....(..(((((......)))))..)))))))..(((((((.....)))))------))........................ ( -20.10, z-score = -1.76, R) >droSim1.chr3R 13721234 107 - 27517382 GAAAACAGAUGGGUGUGAGAGGCUUACACUUAAAAAGAGAGAAC--GUACUGACUAGCCUAUUUUAGUUUAUUUGAUAGAUGG------ACAAAAAAUAUUUAUAUAGGGAAAAU .....(((.((((((((((...))))))))))....(......)--...))).....((((((((.(((((((.....)))))------)).))).........)))))...... ( -16.40, z-score = -0.95, R) >droMoj3.scaffold_6540 9179261 105 - 34148556 CAACAGUAACAGCAAUAAGCCACUCAAACCACAACAGAGUUGCCAGAGGCAGCUUUAAGCCUUAAAGCU--GCCAUAUGAU--------AUGAAAAAGCUUCGCUUGGCUUUAUU .........((.((....((.((((...........)))).))....((((((((((.....)))))))--)))...))..--------.))..((((((......))))))... ( -26.90, z-score = -1.82, R) >consensus GAAAAUAGAUGGGUGUGAGAGGCUUACACUUAAAAAGAGAGAAC__GUACUGACUAGCCUAUUUAAGUUUAUUUGAAUGAUGA______ACAAAAAAUAUUUAUAUAGGGAAAAU .........((((((((((...))))))))))................................................................................... ( -6.20 = -7.12 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:34 2011