| Sequence ID | dm3.chr2L |
|---|---|
| Location | 673,608 – 673,666 |
| Length | 58 |
| Max. P | 0.985712 |
| Location | 673,608 – 673,666 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 97.13 |
| Shannon entropy | 0.04522 |
| G+C content | 0.52155 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -20.01 |
| Energy contribution | -19.57 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 673608 58 + 23011544 GUUGCAAUUGCAUUUCGCAGUUGCAGUUGCAACUGCAUCGCCAGAGCUUUCAGCUAGC ((((((((((((.........))))))))))))......((...(((.....))).)) ( -20.10, z-score = -1.78, R) >droYak2.chr2L 664587 58 + 22324452 GUUGGAGUUGCAUUUCGCAGUUGCAGUUGCAACUGCAUCGCCAGAGCUUUCAGCUAGC (((((((..((.....((((((((....)))))))).((....))))))))))).... ( -21.20, z-score = -1.88, R) >droSec1.super_14 655104 58 + 2068291 GCUGCAGUUGCAUUUCGCAGUUGCAGUUGCAACUGCAUCGCCAGAGCUUUCAGCUAGC ((((.....((.....((((((((....)))))))).((....))))...)))).... ( -20.90, z-score = -1.21, R) >droSim1.chr2L 684384 58 + 22036055 GCUGCAGUUGCAUUUCGCAGUUGCAGUUGCAACUGCAUCGCCAGAGCUUUCAGCUAGC ((((.....((.....((((((((....)))))))).((....))))...)))).... ( -20.90, z-score = -1.21, R) >consensus GCUGCAGUUGCAUUUCGCAGUUGCAGUUGCAACUGCAUCGCCAGAGCUUUCAGCUAGC ((((.((..((.....((((((((....)))))))).((....)))).)))))).... (-20.01 = -19.57 + -0.44)
| Location | 673,608 – 673,666 |
|---|---|
| Length | 58 |
| Sequences | 4 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 97.13 |
| Shannon entropy | 0.04522 |
| G+C content | 0.52155 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -21.29 |
| Energy contribution | -21.35 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 673608 58 - 23011544 GCUAGCUGAAAGCUCUGGCGAUGCAGUUGCAACUGCAACUGCGAAAUGCAAUUGCAAC ((((((.....)))..)))..(((((((((....)))))))))...(((....))).. ( -21.70, z-score = -2.70, R) >droYak2.chr2L 664587 58 - 22324452 GCUAGCUGAAAGCUCUGGCGAUGCAGUUGCAACUGCAACUGCGAAAUGCAACUCCAAC ((((((.....)))..)))..(((((((((....)))))))))............... ( -19.40, z-score = -2.35, R) >droSec1.super_14 655104 58 - 2068291 GCUAGCUGAAAGCUCUGGCGAUGCAGUUGCAACUGCAACUGCGAAAUGCAACUGCAGC ((((((.....)))..)))..((((((((((..(((....)))...)))))))))).. ( -23.30, z-score = -2.41, R) >droSim1.chr2L 684384 58 - 22036055 GCUAGCUGAAAGCUCUGGCGAUGCAGUUGCAACUGCAACUGCGAAAUGCAACUGCAGC ((((((.....)))..)))..((((((((((..(((....)))...)))))))))).. ( -23.30, z-score = -2.41, R) >consensus GCUAGCUGAAAGCUCUGGCGAUGCAGUUGCAACUGCAACUGCGAAAUGCAACUGCAAC ((((((.....)))..)))..((((((((((..(((....)))...)))))))))).. (-21.29 = -21.35 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:37 2011