| Sequence ID | dm3.chr3R |
|---|---|
| Location | 7,588,378 – 7,588,477 |
| Length | 99 |
| Max. P | 0.769022 |
| Location | 7,588,378 – 7,588,477 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 73.59 |
| Shannon entropy | 0.45355 |
| G+C content | 0.58308 |
| Mean single sequence MFE | -27.65 |
| Consensus MFE | -18.21 |
| Energy contribution | -18.85 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.769022 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 7588378 99 - 27905053 CACC-GGGUGCCG--CAGUGUAUUUCCUUGACGUCAC---ACGAUGUUCGAGAACAUGCAUGCUGUCUGCCUGCCGGCGCCCAA------CCCCACCACCCACUCCGCUUC---------- ....-((((((((--((((((((...(((((((((..---..)))).)))))...))))).((.....))))).))))))))..------.....................---------- ( -33.30, z-score = -2.53, R) >droSim1.chr3R 13710458 99 + 27517382 CACC-GGGUGCCG--CAGUGUAUUUCCUUGACGUCAC---ACGAUGUUCGAGAACAUGCAUGCUGUCUGCCUGCCGGCGCCCAA------CCCCACCACCCACACCGCUCC---------- ....-((((((((--((((((((...(((((((((..---..)))).)))))...))))).((.....))))).))))))))..------.....................---------- ( -33.30, z-score = -2.36, R) >droSec1.super_0 6743203 99 + 21120651 CACC-GGGUGCCG--CAGUGUAUUUCCUUGACGUCAC---ACGAUGUUCGAGAACAUGCAUGCUGUCUGCCUGCCGGCGCCCAA------CCCCACCACCCACUCCGCUCC---------- ....-((((((((--((((((((...(((((((((..---..)))).)))))...))))).((.....))))).))))))))..------.....................---------- ( -33.30, z-score = -2.52, R) >droYak2.chr3R 12002110 113 + 28832112 CACC-GGUUGU----CAGUGUAUUUCCUUGACGUCAC---ACAAUGUUCGAGAACAUGCAUGCUGUCUGCCUGCCGGCGCCCAACCCCAGCCCCACCACCCACUCCCCUUUCCUUCACUUC ....-(((((.----..((((((...((((((((...---...))).)))))...))))))..((..((((....))))..))....)))))............................. ( -20.80, z-score = -0.30, R) >droEre2.scaffold_4770 3718240 96 + 17746568 UACC-GGGUGCCAACGGGUGUAUUUCCUUGACGUCAC---ACAAUGUUCGAGAACAUGCAUGCUGUCUGCCUACCGGCGCCCAA------CCCCACCGCCAACUGC--------------- ....-(((((((.....((((((...((((((((...---...))).)))))...))))))((.....)).....)))))))..------................--------------- ( -26.40, z-score = -0.00, R) >droAna3.scaffold_13340 14069019 87 - 23697760 -ACCAAAGUACCA--AUCUCUUCUCCCUUGACGUCACAGAAAAACAUUCGAGAACAUGCAUGUAGUCUGGUGGCGGGGGCUAAU-----GGCUAA-------------------------- -.(((.((..((.--......((......))(((((((((...((((.((......)).))))..))).))))))))..))..)-----))....-------------------------- ( -18.80, z-score = 0.49, R) >consensus CACC_GGGUGCCG__CAGUGUAUUUCCUUGACGUCAC___ACAAUGUUCGAGAACAUGCAUGCUGUCUGCCUGCCGGCGCCCAA______CCCCACCACCCACUCCGCU_C__________ .....(((((((..............((((((((.........))).))))).....(((.((.....)).))).)))))))....................................... (-18.21 = -18.85 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:07:34 2011